Results 81 - 100 of 279 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
3602 | 3' | -57.8 | NC_001650.1 | + | 4381 | 0.67 | 0.801014 |
Target: 5'- aGGGCccguccaaugGGAGGCCGGGGaCCcCu--GGACu -3' miRNA: 3'- -UCCG----------CUUCCGGCUCC-GGuGuuuCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 84963 | 0.67 | 0.818313 |
Target: 5'- cGGCGAAGG-UGAGGa---GGAGGGCg -3' miRNA: 3'- uCCGCUUCCgGCUCCggugUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 129975 | 0.67 | 0.809742 |
Target: 5'- aAGGCG-GGGCCGuuGGGaaGCAu-GGACa -3' miRNA: 3'- -UCCGCuUCCGGC--UCCggUGUuuCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 27904 | 0.67 | 0.82672 |
Target: 5'- cGGgGguGGCgGGGGCCuACAAcgaccuGGACa -3' miRNA: 3'- uCCgCuuCCGgCUCCGG-UGUUu-----CCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 171340 | 0.67 | 0.809742 |
Target: 5'- cGGCccucugcGGUCGAGGCCggccaAUggGGGACg -3' miRNA: 3'- uCCGcuu----CCGGCUCCGG-----UGuuUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 57807 | 0.67 | 0.82672 |
Target: 5'- uGG-GAGcGGCgGGGG-CGCGAAGGGCa -3' miRNA: 3'- uCCgCUU-CCGgCUCCgGUGUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 66860 | 0.67 | 0.82672 |
Target: 5'- uGGCGG-GGCCGcGGGaggCGCcGGGGGCg -3' miRNA: 3'- uCCGCUuCCGGC-UCCg--GUGuUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 150984 | 0.67 | 0.82672 |
Target: 5'- uGGCGgcGGUgGuGGCgGCGGAGGu- -3' miRNA: 3'- uCCGCuuCCGgCuCCGgUGUUUCCug -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 155623 | 0.67 | 0.82672 |
Target: 5'- aGGGgGGAGGa-GAGGUgGgGAGGGGCc -3' miRNA: 3'- -UCCgCUUCCggCUCCGgUgUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 63563 | 0.67 | 0.818313 |
Target: 5'- -cGCGAGGGCCaGgaaaugcucgaAGGCCAgguacccguucuUAAGGGACa -3' miRNA: 3'- ucCGCUUCCGG-C-----------UCCGGU------------GUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 61425 | 0.67 | 0.818313 |
Target: 5'- cGGGCGggGGUC-AGGCaaccccccCACAucgcccggucAGGGGCa -3' miRNA: 3'- -UCCGCuuCCGGcUCCG--------GUGU----------UUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 71042 | 0.67 | 0.809742 |
Target: 5'- gAGcGCGGcGGGCCuGGGCCAgCAGaacAGGAUg -3' miRNA: 3'- -UC-CGCU-UCCGGcUCCGGU-GUU---UCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 53266 | 0.67 | 0.809742 |
Target: 5'- gGGGUcacggGGAGGUCGAGGCCG---GGGuCg -3' miRNA: 3'- -UCCG-----CUUCCGGCUCCGGUguuUCCuG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 133221 | 0.67 | 0.813189 |
Target: 5'- cGGCGuggGGGCUGggagcGGGCCgcccgagaaaaaacaACAGGGGGCc -3' miRNA: 3'- uCCGCu--UCCGGC-----UCCGG---------------UGUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 130297 | 0.67 | 0.816611 |
Target: 5'- cGGGgGGAGGCCaacgccaggcuGGCCGCGgucaucGAGGAg -3' miRNA: 3'- -UCCgCUUCCGGcu---------CCGGUGU------UUCCUg -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 88416 | 0.67 | 0.82672 |
Target: 5'- gAGGCcucGccGGCCGAGGCgGgCAAGgcGGACc -3' miRNA: 3'- -UCCG---CuuCCGGCUCCGgU-GUUU--CCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 129465 | 0.67 | 0.82672 |
Target: 5'- uGGCGgcGGagCG-GGCCACcAGGGAg -3' miRNA: 3'- uCCGCuuCCg-GCuCCGGUGuUUCCUg -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 108846 | 0.67 | 0.809742 |
Target: 5'- cAGGCGcGAGGCCGGguggucGGCCAggauguCAGAGaGCa -3' miRNA: 3'- -UCCGC-UUCCGGCU------CCGGU------GUUUCcUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 111483 | 0.67 | 0.801014 |
Target: 5'- gGGGCGGGcacugcugcGGgCGAGGCCcCAGauucuggcccuGGGGCa -3' miRNA: 3'- -UCCGCUU---------CCgGCUCCGGuGUU-----------UCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 106580 | 0.67 | 0.818313 |
Target: 5'- uGGCac-GGCa-GGGUCACGAGGGACc -3' miRNA: 3'- uCCGcuuCCGgcUCCGGUGUUUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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