miRNA display CGI


Results 101 - 120 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 129975 0.67 0.809742
Target:  5'- aAGGCG-GGGCCGuuGGGaaGCAu-GGACa -3'
miRNA:   3'- -UCCGCuUCCGGC--UCCggUGUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 4381 0.67 0.801014
Target:  5'- aGGGCccguccaaugGGAGGCCGGGGaCCcCu--GGACu -3'
miRNA:   3'- -UCCG----------CUUCCGGCUCC-GGuGuuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 9148 0.67 0.809742
Target:  5'- -uGCGggGuGCCGggguuAGGCCcCAuGGGACu -3'
miRNA:   3'- ucCGCuuC-CGGC-----UCCGGuGUuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 100247 0.67 0.818313
Target:  5'- uGGUGGAcuGGCUGAGGUgGaaacuGAGGGACu -3'
miRNA:   3'- uCCGCUU--CCGGCUCCGgUg----UUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 111483 0.67 0.801014
Target:  5'- gGGGCGGGcacugcugcGGgCGAGGCCcCAGauucuggcccuGGGGCa -3'
miRNA:   3'- -UCCGCUU---------CCgGCUCCGGuGUU-----------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 106580 0.67 0.818313
Target:  5'- uGGCac-GGCa-GGGUCACGAGGGACc -3'
miRNA:   3'- uCCGcuuCCGgcUCCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 108846 0.67 0.809742
Target:  5'- cAGGCGcGAGGCCGGguggucGGCCAggauguCAGAGaGCa -3'
miRNA:   3'- -UCCGC-UUCCGGCU------CCGGU------GUUUCcUG- -5'
3602 3' -57.8 NC_001650.1 + 27858 0.68 0.773975
Target:  5'- gGGGCGAgaaggAGGCCGcguAGGCCAgGuGGuGCa -3'
miRNA:   3'- -UCCGCU-----UCCGGC---UCCGGUgUuUCcUG- -5'
3602 3' -57.8 NC_001650.1 + 65609 0.68 0.755321
Target:  5'- cGGGCGGAGGauGGGGCgACGGGGuuCu -3'
miRNA:   3'- -UCCGCUUCCggCUCCGgUGUUUCcuG- -5'
3602 3' -57.8 NC_001650.1 + 102730 0.68 0.773975
Target:  5'- aGGGCuGGGGCUGcGGCUGCAucgcGGGCu -3'
miRNA:   3'- -UCCGcUUCCGGCuCCGGUGUuu--CCUG- -5'
3602 3' -57.8 NC_001650.1 + 174972 0.68 0.736245
Target:  5'- uAGGCGggGGCCaauggGGGGCCugu-GGGu- -3'
miRNA:   3'- -UCCGCuuCCGG-----CUCCGGuguuUCCug -5'
3602 3' -57.8 NC_001650.1 + 8265 0.68 0.736245
Target:  5'- uAGGCGggGGCCaauggGGGGCCugu-GGGu- -3'
miRNA:   3'- -UCCGCuuCCGG-----CUCCGGuguuUCCug -5'
3602 3' -57.8 NC_001650.1 + 21647 0.68 0.736245
Target:  5'- aAGGCGAAGG---AGGaCACGGGGGGCu -3'
miRNA:   3'- -UCCGCUUCCggcUCCgGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 131433 0.68 0.736245
Target:  5'- aGGGUcucGGGGaCCGGGuCCACGGAGGGCc -3'
miRNA:   3'- -UCCGc--UUCC-GGCUCcGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 135314 0.68 0.745831
Target:  5'- uGGCGAGGGauaccagccaCUGAGGCUACccAGGGu -3'
miRNA:   3'- uCCGCUUCC----------GGCUCCGGUGuuUCCUg -5'
3602 3' -57.8 NC_001650.1 + 105152 0.68 0.745831
Target:  5'- gGGGaCGAcgauguGGuGCUGAcccaGGCCGCAAAGGAg -3'
miRNA:   3'- -UCC-GCU------UC-CGGCU----CCGGUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 163271 0.68 0.771207
Target:  5'- gGGGCGAGGcgguagccugcugaGCgGuGGCCAUGGuGGACa -3'
miRNA:   3'- -UCCGCUUC--------------CGgCuCCGGUGUUuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 26841 0.68 0.764705
Target:  5'- gGGGCaccugcugcccGGGGCCGAGaGCCACAuagcGGGGGu -3'
miRNA:   3'- -UCCGc----------UUCCGGCUC-CGGUGU----UUCCUg -5'
3602 3' -57.8 NC_001650.1 + 49596 0.68 0.764705
Target:  5'- gGGGCGGAGGUgGAcucgaugcuGGUCACGGacAGGuACa -3'
miRNA:   3'- -UCCGCUUCCGgCU---------CCGGUGUU--UCC-UG- -5'
3602 3' -57.8 NC_001650.1 + 83689 0.68 0.755321
Target:  5'- gAGGCuGAGGaGCCGcuGCCccgagaagaGCGAGGGGCu -3'
miRNA:   3'- -UCCG-CUUC-CGGCucCGG---------UGUUUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.