Results 21 - 40 of 279 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3602 | 3' | -57.8 | NC_001650.1 | + | 98038 | 0.76 | 0.326918 |
Target: 5'- cGGGCGAGGGCgaugcuucuggggaCGAgGGUCACGAAGGGg -3' miRNA: 3'- -UCCGCUUCCG--------------GCU-CCGGUGUUUCCUg -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 61344 | 0.75 | 0.38341 |
Target: 5'- cGGCGggGGaCCcgGGGGCgGCGGGGGAg -3' miRNA: 3'- uCCGCuuCC-GG--CUCCGgUGUUUCCUg -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 76997 | 0.75 | 0.391638 |
Target: 5'- gAGG-GAGGcGCaCGuGGCCAUAGAGGGCa -3' miRNA: 3'- -UCCgCUUC-CG-GCuCCGGUGUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 76192 | 0.75 | 0.38341 |
Target: 5'- cAGGUGGAGGCCGAGuGCagggGCGucucccuGGGACg -3' miRNA: 3'- -UCCGCUUCCGGCUC-CGg---UGUu------UCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 83380 | 0.75 | 0.386688 |
Target: 5'- uGGCG--GGCCGAGGCCcugccgucgguaccaGCuGAGGACg -3' miRNA: 3'- uCCGCuuCCGGCUCCGG---------------UGuUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 57967 | 0.75 | 0.391638 |
Target: 5'- gAGGCGc-GGCCGGGGCguCGAuGGGCu -3' miRNA: 3'- -UCCGCuuCCGGCUCCGguGUUuCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 128328 | 0.75 | 0.375299 |
Target: 5'- gAGGCGguGGgCGAGGUgAUggGGGACc -3' miRNA: 3'- -UCCGCuuCCgGCUCCGgUGuuUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 124296 | 0.75 | 0.375299 |
Target: 5'- uGGC-AGGGaCGAGGCCGCGgcGGACg -3' miRNA: 3'- uCCGcUUCCgGCUCCGGUGUuuCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 142784 | 0.75 | 0.367304 |
Target: 5'- aGGGCGgcGGCCG-GGCCcagACGGGGGuCa -3' miRNA: 3'- -UCCGCuuCCGGCuCCGG---UGUUUCCuG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 122219 | 0.75 | 0.367304 |
Target: 5'- cGGCGAGGGagcuggugcCCGAGGCCG---GGGGCg -3' miRNA: 3'- uCCGCUUCC---------GGCUCCGGUguuUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 30707 | 0.75 | 0.359427 |
Target: 5'- gGGGCGGgagagcgagAGG-CGGGGCCGCG-AGGACg -3' miRNA: 3'- -UCCGCU---------UCCgGCUCCGGUGUuUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 130007 | 0.75 | 0.351669 |
Target: 5'- cGGCGcGGGaCGAGGCCGCGggccucAAGGGCc -3' miRNA: 3'- uCCGCuUCCgGCUCCGGUGU------UUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 66889 | 0.74 | 0.399979 |
Target: 5'- gGGGCGAgccggGGGCCGGGGa-GCAuGGGGCc -3' miRNA: 3'- -UCCGCU-----UCCGGCUCCggUGUuUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 125763 | 0.74 | 0.408433 |
Target: 5'- cGGGCGgcGGCCGuGcGCCG--AGGGACg -3' miRNA: 3'- -UCCGCuuCCGGCuC-CGGUguUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 23788 | 0.74 | 0.434451 |
Target: 5'- uGGCuauGggGGCCaGGGCCAgGcuGAGGACg -3' miRNA: 3'- uCCG---CuuCCGGcUCCGGUgU--UUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 31253 | 0.74 | 0.399979 |
Target: 5'- gGGGCGAaggGGGCgGAGGCCAUugccGACg -3' miRNA: 3'- -UCCGCU---UCCGgCUCCGGUGuuucCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 129503 | 0.74 | 0.434451 |
Target: 5'- gAGGCGGAGGCCaagcuggagaagGAGGCCG---AGGAg -3' miRNA: 3'- -UCCGCUUCCGG------------CUCCGGUguuUCCUg -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 37590 | 0.74 | 0.425671 |
Target: 5'- cGGGCGgcGGCCGAGcgccugugcGCCAUGAGGGu- -3' miRNA: 3'- -UCCGCuuCCGGCUC---------CGGUGUUUCCug -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 84987 | 0.74 | 0.416997 |
Target: 5'- uGGCGggGG-CGAGGCCGagccGGGCg -3' miRNA: 3'- uCCGCuuCCgGCUCCGGUguuuCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 52789 | 0.74 | 0.408433 |
Target: 5'- cGGCGgcGGCCcucGGGGCCcggGCGcAGGACg -3' miRNA: 3'- uCCGCuuCCGG---CUCCGG---UGUuUCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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