miRNA display CGI


Results 81 - 100 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 82226 0.71 0.596718
Target:  5'- gGGGCGAggcaGGGCagcGGGCgGgGGAGGACg -3'
miRNA:   3'- -UCCGCU----UCCGgc-UCCGgUgUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 91555 0.71 0.596718
Target:  5'- gAGGCGGcgugcAGGCUGAGGCUGgAGucguGGAUg -3'
miRNA:   3'- -UCCGCU-----UCCGGCUCCGGUgUUu---CCUG- -5'
3602 3' -57.8 NC_001650.1 + 57536 0.71 0.596718
Target:  5'- gAGGCGccGGCUGGGGCU----GGGGCu -3'
miRNA:   3'- -UCCGCuuCCGGCUCCGGuguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 83007 0.71 0.586697
Target:  5'- gGGGCuGGAGGCgGAGGUgaACAAGcGGGCc -3'
miRNA:   3'- -UCCG-CUUCCGgCUCCGg-UGUUU-CCUG- -5'
3602 3' -57.8 NC_001650.1 + 159610 0.71 0.576708
Target:  5'- cGGCGggGGCgGuGGgCAaGGGGGACc -3'
miRNA:   3'- uCCGCuuCCGgCuCCgGUgUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 60276 0.71 0.55685
Target:  5'- cGGCugcugcGGCUGAGGCCGCu--GGGCg -3'
miRNA:   3'- uCCGcuu---CCGGCUCCGGUGuuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 69229 0.71 0.566757
Target:  5'- cGGGCGcugGAGGCCGGGGgCGagUAGAGcGGCg -3'
miRNA:   3'- -UCCGC---UUCCGGCUCCgGU--GUUUC-CUG- -5'
3602 3' -57.8 NC_001650.1 + 150552 0.71 0.610789
Target:  5'- gAGGCGGAGGCUuGGGCUuuggcucagguugagGCGGAGG-Cu -3'
miRNA:   3'- -UCCGCUUCCGGcUCCGG---------------UGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 150612 0.71 0.610789
Target:  5'- gAGGCGGAGGCUuGGGCUuuggcucagguugagGCGGAGG-Cu -3'
miRNA:   3'- -UCCGCUUCCGGcUCCGG---------------UGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 10944 0.71 0.576708
Target:  5'- uGGGUGuGGGuuGGcGGCCAUcuuGAGGGGCg -3'
miRNA:   3'- -UCCGCuUCCggCU-CCGGUG---UUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 146677 0.71 0.596718
Target:  5'- cGGCGcccGGGCCGccuaGGGCCGCGggucuauuaGAGGAg -3'
miRNA:   3'- uCCGCu--UCCGGC----UCCGGUGU---------UUCCUg -5'
3602 3' -57.8 NC_001650.1 + 73194 0.71 0.586697
Target:  5'- gGGGCGcAGGaGCgCGcguacuGGGCCAUggGGGACu -3'
miRNA:   3'- -UCCGC-UUC-CG-GC------UCCGGUGuuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 90101 0.71 0.576708
Target:  5'- aGGGUG-AGGCUcaGGGCCGCGuccAGGGACu -3'
miRNA:   3'- -UCCGCuUCCGGc-UCCGGUGU---UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 143585 0.71 0.566757
Target:  5'- aGGGCGAGGGCUG-GGUaGgGAGGGAg -3'
miRNA:   3'- -UCCGCUUCCGGCuCCGgUgUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 47661 0.71 0.596718
Target:  5'- gGGGCGAGGG-UGAGaGCCugGAcacGGGCg -3'
miRNA:   3'- -UCCGCUUCCgGCUC-CGGugUUu--CCUG- -5'
3602 3' -57.8 NC_001650.1 + 82512 0.71 0.576708
Target:  5'- uGGGCGAacggGGGCgggUGGGGCgaGCGGGGGGCu -3'
miRNA:   3'- -UCCGCU----UCCG---GCUCCGg-UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 177651 0.71 0.576708
Target:  5'- uGGGUGuGGGuuGGcGGCCAUcuuGAGGGGCg -3'
miRNA:   3'- -UCCGCuUCCggCU-CCGGUG---UUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 92041 0.71 0.583697
Target:  5'- gGGGCGGGggugggggucccucGGCCGAGuCCACGgcccAGGGGCu -3'
miRNA:   3'- -UCCGCUU--------------CCGGCUCcGGUGU----UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 130679 0.7 0.657126
Target:  5'- gGGGC-AAGGCCGccguggagggguGGGUCAaaaaAAGGGACg -3'
miRNA:   3'- -UCCGcUUCCGGC------------UCCGGUg---UUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 77024 0.7 0.626906
Target:  5'- aGGGUGGgguucAGGCCGcgcuGGGCCuCGGGGGAg -3'
miRNA:   3'- -UCCGCU-----UCCGGC----UCCGGuGUUUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.