miRNA display CGI


Results 61 - 80 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 150845 0.72 0.508183
Target:  5'- cAGGUGGAGGCgGAGGCUugGGuuuAGGu- -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGugUU---UCCug -5'
3602 3' -57.8 NC_001650.1 + 630 0.72 0.508183
Target:  5'- gGGGgGAGuGGCUGGGGUguugUGCAAGGGGCg -3'
miRNA:   3'- -UCCgCUU-CCGGCUCCG----GUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 73285 0.72 0.512014
Target:  5'- cGGGUGGAuccuguucuuggccuGGuuGAcgaaGGCCACGGGGGACa -3'
miRNA:   3'- -UCCGCUU---------------CCggCU----CCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 21525 0.72 0.517783
Target:  5'- gGGGCuacugcuggGAGGGCCGcGGCUGCGGuGGACc -3'
miRNA:   3'- -UCCG---------CUUCCGGCuCCGGUGUUuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 75437 0.72 0.517783
Target:  5'- cGGGCGAGGaagCGAGcGCCGCGAgaGGGGCu -3'
miRNA:   3'- -UCCGCUUCcg-GCUC-CGGUGUU--UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 72687 0.72 0.527456
Target:  5'- uAGGCGAGGGCCaGGGCCAgguuguUAAAGucCa -3'
miRNA:   3'- -UCCGCUUCCGGcUCCGGU------GUUUCcuG- -5'
3602 3' -57.8 NC_001650.1 + 165123 0.72 0.527456
Target:  5'- uGGCGgcGGCCGcggugGGGCC-CGGGGGGu -3'
miRNA:   3'- uCCGCuuCCGGC-----UCCGGuGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 114599 0.72 0.527456
Target:  5'- cAGGUGAcGGCaggugcuGGCCACcGAGGACa -3'
miRNA:   3'- -UCCGCUuCCGgcu----CCGGUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 35278 0.72 0.537194
Target:  5'- uGGGCGGggcGGGCCGGGGacgggCGCGGgccAGGGCc -3'
miRNA:   3'- -UCCGCU---UCCGGCUCCg----GUGUU---UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 84401 0.72 0.537194
Target:  5'- aGGGCGGAGGCCugagcaucGGGGUCucCAGcGGGGCg -3'
miRNA:   3'- -UCCGCUUCCGG--------CUCCGGu-GUU-UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 115865 0.72 0.537194
Target:  5'- uGGGCGguGGCUGAGuGCCguACAccGGGCc -3'
miRNA:   3'- -UCCGCuuCCGGCUC-CGG--UGUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 118014 0.72 0.537194
Target:  5'- gGGGCGAGGgggaggguGCCGGGGCaGCGggagaggggGAGGGCg -3'
miRNA:   3'- -UCCGCUUC--------CGGCUCCGgUGU---------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 80561 0.72 0.537194
Target:  5'- uGGgGAAgGGCCGccuGGGCUccGCGAAGGGCc -3'
miRNA:   3'- uCCgCUU-CCGGC---UCCGG--UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 143473 0.72 0.546994
Target:  5'- aGGGCac--GCCGAGGCCGaguuGAGGGCg -3'
miRNA:   3'- -UCCGcuucCGGCUCCGGUgu--UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 127478 0.72 0.546994
Target:  5'- aGGGCGGggacgaugGGGCCGGGGaggggggCGCcGGGGACg -3'
miRNA:   3'- -UCCGCU--------UCCGGCUCCg------GUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 165468 0.72 0.546994
Target:  5'- aAGGCGAGcGGcCCGAGGaaGCAcccGGGGCg -3'
miRNA:   3'- -UCCGCUU-CC-GGCUCCggUGUu--UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 158256 0.72 0.546994
Target:  5'- gGGGCuGgcGGCCgugGAGGCCugGAugcccaGGGGCa -3'
miRNA:   3'- -UCCG-CuuCCGG---CUCCGGugUU------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 60276 0.71 0.55685
Target:  5'- cGGCugcugcGGCUGAGGCCGCu--GGGCg -3'
miRNA:   3'- uCCGcuu---CCGGCUCCGGUGuuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 143585 0.71 0.566757
Target:  5'- aGGGCGAGGGCUG-GGUaGgGAGGGAg -3'
miRNA:   3'- -UCCGCUUCCGGCuCCGgUgUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 69229 0.71 0.566757
Target:  5'- cGGGCGcugGAGGCCGGGGgCGagUAGAGcGGCg -3'
miRNA:   3'- -UCCGC---UUCCGGCUCCgGU--GUUUC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.