miRNA display CGI


Results 101 - 120 of 279 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 146092 0.7 0.626906
Target:  5'- -aGUGGAGGCacuuCGGGGCCGCGuacguGGACu -3'
miRNA:   3'- ucCGCUUCCG----GCUCCGGUGUuu---CCUG- -5'
3602 3' -57.8 NC_001650.1 + 77024 0.7 0.626906
Target:  5'- aGGGUGGgguucAGGCCGcgcuGGGCCuCGGGGGAg -3'
miRNA:   3'- -UCCGCU-----UCCGGC----UCCGGuGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 19029 0.7 0.636985
Target:  5'- uGGCcGAGGCCGugcuGGCCAgcAGGGAa -3'
miRNA:   3'- uCCGcUUCCGGCu---CCGGUguUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 88703 0.7 0.636985
Target:  5'- cGGGCGAuGGaGCgGGGGCgGgAGGGGGCu -3'
miRNA:   3'- -UCCGCU-UC-CGgCUCCGgUgUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 46364 0.7 0.647062
Target:  5'- gGGGCGcGGcGCCGcaucGGCCGC--GGGGCa -3'
miRNA:   3'- -UCCGCuUC-CGGCu---CCGGUGuuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 27804 0.7 0.647062
Target:  5'- ---aGAGGGCCGAGGCgggCACGcccgggaagGAGGGCa -3'
miRNA:   3'- uccgCUUCCGGCUCCG---GUGU---------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 158294 0.7 0.657126
Target:  5'- uGGCGuugucGGGCCGGGGCaGCAucagguagauGGACa -3'
miRNA:   3'- uCCGCu----UCCGGCUCCGgUGUuu--------CCUG- -5'
3602 3' -57.8 NC_001650.1 + 60178 0.7 0.657126
Target:  5'- aGGGaGGAGGCCGGGGUCuGCGGGcGGCg -3'
miRNA:   3'- -UCCgCUUCCGGCUCCGG-UGUUUcCUG- -5'
3602 3' -57.8 NC_001650.1 + 130679 0.7 0.657126
Target:  5'- gGGGC-AAGGCCGccguggagggguGGGUCAaaaaAAGGGACg -3'
miRNA:   3'- -UCCGcUUCCGGC------------UCCGGUg---UUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 26948 0.69 0.674188
Target:  5'- gAGGCGGcgcacagccccuccAGGCCG-GGCCcgGCGAAgauGGGCu -3'
miRNA:   3'- -UCCGCU--------------UCCGGCuCCGG--UGUUU---CCUG- -5'
3602 3' -57.8 NC_001650.1 + 130839 0.69 0.677189
Target:  5'- gAGGCGGccGCCcugcugcucGAGGCCAagacCGGGGGGCu -3'
miRNA:   3'- -UCCGCUucCGG---------CUCCGGU----GUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 78657 0.69 0.677189
Target:  5'- gAGGCGuuccuGGaCCGccacGGCCugGCGGAGGACg -3'
miRNA:   3'- -UCCGCuu---CC-GGCu---CCGG--UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 147653 0.69 0.684181
Target:  5'- gGGGUGAGccggugggaagcgcGGCCGGGaGCCGCucuGGGGGg -3'
miRNA:   3'- -UCCGCUU--------------CCGGCUC-CGGUGu--UUCCUg -5'
3602 3' -57.8 NC_001650.1 + 22210 0.69 0.686175
Target:  5'- cGGGCGAacuugaggucAGGCCucuccccGGGGuCCcCGAGGGGCg -3'
miRNA:   3'- -UCCGCU----------UCCGG-------CUCC-GGuGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 66731 0.69 0.691152
Target:  5'- cAGGCGGAggaguucagagagacGGuCCGGGGCCuGCGgugcaagcucGAGGACu -3'
miRNA:   3'- -UCCGCUU---------------CC-GGCUCCGG-UGU----------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 136724 0.69 0.694133
Target:  5'- cGGUGggGGCgGuGGCgGCGgcgaccuucuuggcGGGGGCg -3'
miRNA:   3'- uCCGCuuCCGgCuCCGgUGU--------------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 108701 0.69 0.697109
Target:  5'- uGGGCGAcuccuCgGGGGUCGCGGGGGGCg -3'
miRNA:   3'- -UCCGCUucc--GgCUCCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 110946 0.69 0.697109
Target:  5'- gGGGCGGcuGCUGGGGCUGCuGAGG-Cu -3'
miRNA:   3'- -UCCGCUucCGGCUCCGGUGuUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 129133 0.69 0.706994
Target:  5'- -cGCGcccGGGGCCGAGGaCAC-GGGGGCg -3'
miRNA:   3'- ucCGC---UUCCGGCUCCgGUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 158006 0.69 0.706994
Target:  5'- cGGCGuccucguAGcCCGAGGCCACGcuGGGGGu -3'
miRNA:   3'- uCCGCu------UCcGGCUCCGGUGU--UUCCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.