miRNA display CGI


Results 81 - 100 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 69765 0.67 0.809742
Target:  5'- uAGGCucGGGCCucaGGGCgGCGuccAGGGCg -3'
miRNA:   3'- -UCCGcuUCCGGc--UCCGgUGUu--UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 129975 0.67 0.809742
Target:  5'- aAGGCG-GGGCCGuuGGGaaGCAu-GGACa -3'
miRNA:   3'- -UCCGCuUCCGGC--UCCggUGUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 4633 0.67 0.809742
Target:  5'- cGGCccucugcGGUCGAGGCCggccaAUggGGGACg -3'
miRNA:   3'- uCCGcuu----CCGGCUCCGG-----UGuuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 30992 0.67 0.804523
Target:  5'- gAGGCGcggaugcacaggagcAGGGCCu-GGCUgggGCGGGGGGCg -3'
miRNA:   3'- -UCCGC---------------UUCCGGcuCCGG---UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 171088 0.67 0.801014
Target:  5'- aGGGCccguccaaugGGAGGCCGGGGaCCcCu--GGACu -3'
miRNA:   3'- -UCCG----------CUUCCGGCUCC-GGuGuuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 129724 0.67 0.801014
Target:  5'- -aGUGGAGGCCGAGGU-----GGGGCu -3'
miRNA:   3'- ucCGCUUCCGGCUCCGguguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 35900 0.67 0.801014
Target:  5'- cGGGCGGAcuGGCCG-GGCUACAAc---- -3'
miRNA:   3'- -UCCGCUU--CCGGCuCCGGUGUUuccug -5'
3602 3' -57.8 NC_001650.1 + 83159 0.67 0.801014
Target:  5'- uGGCGGAGGCCauccGAGGCUucc-AGGuCg -3'
miRNA:   3'- uCCGCUUCCGG----CUCCGGuguuUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 143547 0.67 0.801014
Target:  5'- cAGGUGGuuGCCGAucGCCAgGGAGGAUu -3'
miRNA:   3'- -UCCGCUucCGGCUc-CGGUgUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 4381 0.67 0.801014
Target:  5'- aGGGCccguccaaugGGAGGCCGGGGaCCcCu--GGACu -3'
miRNA:   3'- -UCCG----------CUUCCGGCUCC-GGuGuuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 111483 0.67 0.801014
Target:  5'- gGGGCGGGcacugcugcGGgCGAGGCCcCAGauucuggcccuGGGGCa -3'
miRNA:   3'- -UCCGCUU---------CCgGCUCCGGuGUU-----------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 39087 0.67 0.801014
Target:  5'- gGGGCGGAGGgaauaaaGAGGCCcacGCGugcGGGAUa -3'
miRNA:   3'- -UCCGCUUCCgg-----CUCCGG---UGUu--UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 73362 0.67 0.800133
Target:  5'- gAGGUGGAGGCCcugGAGGagUACAGgauguucucggacAGGACc -3'
miRNA:   3'- -UCCGCUUCCGG---CUCCg-GUGUU-------------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 61257 0.67 0.798366
Target:  5'- aGGGCGguGGCCugcuccagccgcgcGAGGuCCGCc-AGGACc -3'
miRNA:   3'- -UCCGCuuCCGG--------------CUCC-GGUGuuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 150672 0.67 0.798366
Target:  5'- cAGGUGGAGGCUuGGGCUuuggcucaguggagGCGGAGG-Cu -3'
miRNA:   3'- -UCCGCUUCCGGcUCCGG--------------UGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 79075 0.67 0.792138
Target:  5'- gAGGCGucGGGCCccGGGCCugGcuccGGGCg -3'
miRNA:   3'- -UCCGCu-UCCGGc-UCCGGugUuu--CCUG- -5'
3602 3' -57.8 NC_001650.1 + 129365 0.67 0.792138
Target:  5'- gAGGacugGAAGGCCuucgugacgGAGGCCcccaucaacaGCAugGAGGACg -3'
miRNA:   3'- -UCCg---CUUCCGG---------CUCCGG----------UGU--UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 48552 0.67 0.792138
Target:  5'- aGGGUGAGGGCCGuGcCCACu---GACa -3'
miRNA:   3'- -UCCGCUUCCGGCuCcGGUGuuucCUG- -5'
3602 3' -57.8 NC_001650.1 + 136215 0.67 0.792138
Target:  5'- aGGGUGAAGGCCagaaacAGGCUcuGCA--GGACc -3'
miRNA:   3'- -UCCGCUUCCGGc-----UCCGG--UGUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 92589 0.67 0.792138
Target:  5'- cAGGacugGAAGGUgGAGGCCuuGAAGGcCc -3'
miRNA:   3'- -UCCg---CUUCCGgCUCCGGugUUUCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.