miRNA display CGI


Results 21 - 40 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 22319 0.66 0.872598
Target:  5'- gAGGCGGGcaccuucGGCUGGGGCaACGugcuGGGCc -3'
miRNA:   3'- -UCCGCUU-------CCGGCUCCGgUGUuu--CCUG- -5'
3602 3' -57.8 NC_001650.1 + 23788 0.74 0.434451
Target:  5'- uGGCuauGggGGCCaGGGCCAgGcuGAGGACg -3'
miRNA:   3'- uCCG---CuuCCGGcUCCGGUgU--UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 24008 1.09 0.002247
Target:  5'- uAGGCGAAGGCCGAGGCCACAAAGGACu -3'
miRNA:   3'- -UCCGCUUCCGGCUCCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 24032 0.66 0.873317
Target:  5'- gAGGCu--GGCCGucucGGGgCACGAcgucgGGGACg -3'
miRNA:   3'- -UCCGcuuCCGGC----UCCgGUGUU-----UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 24075 0.73 0.461404
Target:  5'- uGGGCGGcccuGGCCGAgauGGCCAUGgcGGGGAUg -3'
miRNA:   3'- -UCCGCUu---CCGGCU---CCGGUGU--UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 26841 0.68 0.764705
Target:  5'- gGGGCaccugcugcccGGGGCCGAGaGCCACAuagcGGGGGu -3'
miRNA:   3'- -UCCGc----------UUCCGGCUC-CGGUGU----UUCCUg -5'
3602 3' -57.8 NC_001650.1 + 26948 0.69 0.674188
Target:  5'- gAGGCGGcgcacagccccuccAGGCCG-GGCCcgGCGAAgauGGGCu -3'
miRNA:   3'- -UCCGCU--------------UCCGGCuCCGG--UGUUU---CCUG- -5'
3602 3' -57.8 NC_001650.1 + 27804 0.7 0.647062
Target:  5'- ---aGAGGGCCGAGGCgggCACGcccgggaagGAGGGCa -3'
miRNA:   3'- uccgCUUCCGGCUCCG---GUGU---------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 27858 0.68 0.773975
Target:  5'- gGGGCGAgaaggAGGCCGcguAGGCCAgGuGGuGCa -3'
miRNA:   3'- -UCCGCU-----UCCGGC---UCCGGUgUuUCcUG- -5'
3602 3' -57.8 NC_001650.1 + 27904 0.67 0.82672
Target:  5'- cGGgGguGGCgGGGGCCuACAAcgaccuGGACa -3'
miRNA:   3'- uCCgCuuCCGgCUCCGG-UGUUu-----CCUG- -5'
3602 3' -57.8 NC_001650.1 + 28039 0.68 0.755321
Target:  5'- gAGGCucucGGAGGCgggcaucugCGAGGgCGgGGAGGACg -3'
miRNA:   3'- -UCCG----CUUCCG---------GCUCCgGUgUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 29157 0.69 0.726571
Target:  5'- uGGGUcu-GGCCGcAGGCCcuaaAGAGGGCg -3'
miRNA:   3'- -UCCGcuuCCGGC-UCCGGug--UUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 29706 0.66 0.873317
Target:  5'- -cGCGGAGuGCCuGGGucacCCACAGcAGGACg -3'
miRNA:   3'- ucCGCUUC-CGGcUCC----GGUGUU-UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 30707 0.75 0.359427
Target:  5'- gGGGCGGgagagcgagAGG-CGGGGCCGCG-AGGACg -3'
miRNA:   3'- -UCCGCU---------UCCgGCUCCGGUGUuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 30992 0.67 0.804523
Target:  5'- gAGGCGcggaugcacaggagcAGGGCCu-GGCUgggGCGGGGGGCg -3'
miRNA:   3'- -UCCGC---------------UUCCGGcuCCGG---UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 31253 0.74 0.399979
Target:  5'- gGGGCGAaggGGGCgGAGGCCAUugccGACg -3'
miRNA:   3'- -UCCGCU---UCCGgCUCCGGUGuuucCUG- -5'
3602 3' -57.8 NC_001650.1 + 31925 0.68 0.745831
Target:  5'- cGGCGucgagacaauAGGCCaGGGCCACGuugucAGGAa -3'
miRNA:   3'- uCCGCu---------UCCGGcUCCGGUGUu----UCCUg -5'
3602 3' -57.8 NC_001650.1 + 34719 0.66 0.866041
Target:  5'- gAGGCGAcaAGaUgGAGGCUACGAcgacguGGACg -3'
miRNA:   3'- -UCCGCU--UCcGgCUCCGGUGUUu-----CCUG- -5'
3602 3' -57.8 NC_001650.1 + 35278 0.72 0.537194
Target:  5'- uGGGCGGggcGGGCCGGGGacgggCGCGGgccAGGGCc -3'
miRNA:   3'- -UCCGCU---UCCGGCUCCg----GUGUU---UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 35900 0.67 0.801014
Target:  5'- cGGGCGGAcuGGCCG-GGCUACAAc---- -3'
miRNA:   3'- -UCCGCUU--CCGGCuCCGGUGUUuccug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.