miRNA display CGI


Results 41 - 60 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 37005 0.67 0.82672
Target:  5'- aAGGCcaucAGGCgCGAgcuGGCCACGGucucGGACg -3'
miRNA:   3'- -UCCGcu--UCCG-GCU---CCGGUGUUu---CCUG- -5'
3602 3' -57.8 NC_001650.1 + 37590 0.74 0.425671
Target:  5'- cGGGCGgcGGCCGAGcgccugugcGCCAUGAGGGu- -3'
miRNA:   3'- -UCCGCuuCCGGCUC---------CGGUGUUUCCug -5'
3602 3' -57.8 NC_001650.1 + 39087 0.67 0.801014
Target:  5'- gGGGCGGAGGgaauaaaGAGGCCcacGCGugcGGGAUa -3'
miRNA:   3'- -UCCGCUUCCgg-----CUCCGG---UGUu--UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 44397 0.68 0.755321
Target:  5'- gGGGUGAgGGGgUGAGGaCACAAcgccaGGGACa -3'
miRNA:   3'- -UCCGCU-UCCgGCUCCgGUGUU-----UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 46018 0.66 0.861577
Target:  5'- cGGGCcaGGAucgcugauugacagcGGCCGcGGCCAaugaGAAGGGCc -3'
miRNA:   3'- -UCCG--CUU---------------CCGGCuCCGGUg---UUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 46364 0.7 0.647062
Target:  5'- gGGGCGcGGcGCCGcaucGGCCGC--GGGGCa -3'
miRNA:   3'- -UCCGCuUC-CGGCu---CCGGUGuuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 46509 0.67 0.792138
Target:  5'- cGGCGucgGGGCCGGcGGCgACc--GGGCg -3'
miRNA:   3'- uCCGCu--UCCGGCU-CCGgUGuuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 47661 0.71 0.596718
Target:  5'- gGGGCGAGGG-UGAGaGCCugGAcacGGGCg -3'
miRNA:   3'- -UCCGCUUCCgGCUC-CGGugUUu--CCUG- -5'
3602 3' -57.8 NC_001650.1 + 48552 0.67 0.792138
Target:  5'- aGGGUGAGGGCCGuGcCCACu---GACa -3'
miRNA:   3'- -UCCGCUUCCGGCuCcGGUGuuucCUG- -5'
3602 3' -57.8 NC_001650.1 + 49596 0.68 0.764705
Target:  5'- gGGGCGGAGGUgGAcucgaugcuGGUCACGGacAGGuACa -3'
miRNA:   3'- -UCCGCUUCCGgCU---------CCGGUGUU--UCC-UG- -5'
3602 3' -57.8 NC_001650.1 + 49860 0.66 0.873317
Target:  5'- gGGGC-AAGGCCcacccccAGGCCugGuuguagAGGGGCg -3'
miRNA:   3'- -UCCGcUUCCGGc------UCCGGugU------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 50024 0.79 0.211135
Target:  5'- gAGGaGGAGGCCcGGGCCugAGGGGGCu -3'
miRNA:   3'- -UCCgCUUCCGGcUCCGGugUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 50164 0.68 0.755321
Target:  5'- gAGGUcccuGAagcuGGGCCGGGGCuCGCGucccGGGAUa -3'
miRNA:   3'- -UCCG----CU----UCCGGCUCCG-GUGUu---UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 50233 0.76 0.336512
Target:  5'- cGGGCGGAGGgCGGGGaCCAUGcgcgacAGGGGCg -3'
miRNA:   3'- -UCCGCUUCCgGCUCC-GGUGU------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 50543 0.89 0.047247
Target:  5'- gGGGCucgaGGAGGCCGGGGCCGgGAGGGACg -3'
miRNA:   3'- -UCCG----CUUCCGGCUCCGGUgUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 51109 0.69 0.716818
Target:  5'- uGGUGcuGGGCCGAGGCCACc------ -3'
miRNA:   3'- uCCGCu-UCCGGCUCCGGUGuuuccug -5'
3602 3' -57.8 NC_001650.1 + 51319 0.66 0.873317
Target:  5'- gGGGaCGguGGCCucGGCCcaGCAccAGGGGCu -3'
miRNA:   3'- -UCC-GCuuCCGGcuCCGG--UGU--UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 52556 0.66 0.866041
Target:  5'- gGGGCGgcGGCgGGGGCguucgaguCGGGGGGu -3'
miRNA:   3'- -UCCGCuuCCGgCUCCGgu------GUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 52789 0.74 0.408433
Target:  5'- cGGCGgcGGCCcucGGGGCCcggGCGcAGGACg -3'
miRNA:   3'- uCCGCuuCCGG---CUCCGG---UGUuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 53266 0.67 0.809742
Target:  5'- gGGGUcacggGGAGGUCGAGGCCG---GGGuCg -3'
miRNA:   3'- -UCCG-----CUUCCGGCUCCGGUguuUCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.