miRNA display CGI


Results 61 - 80 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 56686 0.79 0.227002
Target:  5'- uGGGCGccagcuGGGCUGGGGUCAgCGAGGGGCg -3'
miRNA:   3'- -UCCGCu-----UCCGGCUCCGGU-GUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 57422 0.69 0.706994
Target:  5'- cGGGCGcgcacGGCacucccccaGAGGCCugGAAGGGg -3'
miRNA:   3'- -UCCGCuu---CCGg--------CUCCGGugUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 57536 0.71 0.596718
Target:  5'- gAGGCGccGGCUGGGGCU----GGGGCu -3'
miRNA:   3'- -UCCGCuuCCGGCUCCGGuguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 57628 0.73 0.498658
Target:  5'- uGGgGGAGuGCCGugcgcgcccGGGCCGCAGGGGGu -3'
miRNA:   3'- uCCgCUUC-CGGC---------UCCGGUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 57807 0.67 0.82672
Target:  5'- uGG-GAGcGGCgGGGG-CGCGAAGGGCa -3'
miRNA:   3'- uCCgCUU-CCGgCUCCgGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 57925 0.66 0.843012
Target:  5'- cGGgGAAGGgCGcGGCCG---GGGGCg -3'
miRNA:   3'- uCCgCUUCCgGCuCCGGUguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 57967 0.75 0.391638
Target:  5'- gAGGCGc-GGCCGGGGCguCGAuGGGCu -3'
miRNA:   3'- -UCCGCuuCCGGCUCCGguGUUuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 58100 0.73 0.498658
Target:  5'- -cGCcGGGGCCuGGGCCGCGAAGGGu -3'
miRNA:   3'- ucCGcUUCCGGcUCCGGUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 58940 0.66 0.866041
Target:  5'- gGGGCGcggGAGGCCcggGAGGCgGCGgcGG-Cu -3'
miRNA:   3'- -UCCGC---UUCCGG---CUCCGgUGUuuCCuG- -5'
3602 3' -57.8 NC_001650.1 + 59700 0.69 0.716818
Target:  5'- uGGUGGAGGU---GGUCAUGAGGGACa -3'
miRNA:   3'- uCCGCUUCCGgcuCCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 59736 0.69 0.716818
Target:  5'- gGGGCGucgaGGGGcCCGuGGCCcCcGGGGGCg -3'
miRNA:   3'- -UCCGC----UUCC-GGCuCCGGuGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 59868 0.77 0.300731
Target:  5'- cAGGC---GGCCGAGGCgucCGCGAAGGACc -3'
miRNA:   3'- -UCCGcuuCCGGCUCCG---GUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 60126 0.66 0.843012
Target:  5'- -cGCGGAGGCCGcGuCCGCGGucuccAGGGCc -3'
miRNA:   3'- ucCGCUUCCGGCuCcGGUGUU-----UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 60178 0.7 0.657126
Target:  5'- aGGGaGGAGGCCGGGGUCuGCGGGcGGCg -3'
miRNA:   3'- -UCCgCUUCCGGCUCCGG-UGUUUcCUG- -5'
3602 3' -57.8 NC_001650.1 + 60276 0.71 0.55685
Target:  5'- cGGCugcugcGGCUGAGGCCGCu--GGGCg -3'
miRNA:   3'- uCCGcuu---CCGGCUCCGGUGuuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 60311 0.66 0.843012
Target:  5'- cGGGCGGcGGGUCG-GGCCAgacccuCGgcGGGCa -3'
miRNA:   3'- -UCCGCU-UCCGGCuCCGGU------GUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 61079 0.77 0.287263
Target:  5'- gAGGUGcuGGCCucGGCCACcGAGGACu -3'
miRNA:   3'- -UCCGCuuCCGGcuCCGGUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 61257 0.67 0.798366
Target:  5'- aGGGCGguGGCCugcuccagccgcgcGAGGuCCGCc-AGGACc -3'
miRNA:   3'- -UCCGCuuCCGG--------------CUCC-GGUGuuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 61344 0.75 0.38341
Target:  5'- cGGCGggGGaCCcgGGGGCgGCGGGGGAg -3'
miRNA:   3'- uCCGCuuCC-GG--CUCCGgUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 61425 0.67 0.818313
Target:  5'- cGGGCGggGGUC-AGGCaaccccccCACAucgcccggucAGGGGCa -3'
miRNA:   3'- -UCCGCuuCCGGcUCCG--------GUGU----------UUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.