miRNA display CGI


Results 81 - 100 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 63563 0.67 0.818313
Target:  5'- -cGCGAGGGCCaGgaaaugcucgaAGGCCAgguacccguucuUAAGGGACa -3'
miRNA:   3'- ucCGCUUCCGG-C-----------UCCGGU------------GUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 65282 0.69 0.715838
Target:  5'- gGGGUGAAagcagguGGCCGucauGGcCCGCAgGAGGGCc -3'
miRNA:   3'- -UCCGCUU-------CCGGCu---CC-GGUGU-UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 65609 0.68 0.755321
Target:  5'- cGGGCGGAGGauGGGGCgACGGGGuuCu -3'
miRNA:   3'- -UCCGCUUCCggCUCCGgUGUUUCcuG- -5'
3602 3' -57.8 NC_001650.1 + 66731 0.69 0.691152
Target:  5'- cAGGCGGAggaguucagagagacGGuCCGGGGCCuGCGgugcaagcucGAGGACu -3'
miRNA:   3'- -UCCGCUU---------------CC-GGCUCCGG-UGU----------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 66860 0.67 0.82672
Target:  5'- uGGCGG-GGCCGcGGGaggCGCcGGGGGCg -3'
miRNA:   3'- uCCGCUuCCGGC-UCCg--GUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 66889 0.74 0.399979
Target:  5'- gGGGCGAgccggGGGCCGGGGa-GCAuGGGGCc -3'
miRNA:   3'- -UCCGCU-----UCCGGCUCCggUGUuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 68805 0.79 0.221604
Target:  5'- gGGGC--AGGCCGGGGCCcucgcuCGAGGGGCg -3'
miRNA:   3'- -UCCGcuUCCGGCUCCGGu-----GUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 69229 0.71 0.566757
Target:  5'- cGGGCGcugGAGGCCGGGGgCGagUAGAGcGGCg -3'
miRNA:   3'- -UCCGC---UUCCGGCUCCgGU--GUUUC-CUG- -5'
3602 3' -57.8 NC_001650.1 + 69261 0.66 0.850883
Target:  5'- gAGGUcucccuGGAGGCCGAGGgcuuCCACGAgaaccAGGcGCu -3'
miRNA:   3'- -UCCG------CUUCCGGCUCC----GGUGUU-----UCC-UG- -5'
3602 3' -57.8 NC_001650.1 + 69765 0.67 0.809742
Target:  5'- uAGGCucGGGCCucaGGGCgGCGuccAGGGCg -3'
miRNA:   3'- -UCCGcuUCCGGc--UCCGgUGUu--UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 69860 0.73 0.489214
Target:  5'- aGGGCGAaagagAGGUCGAugaggcGGCgGCGAAGGAa -3'
miRNA:   3'- -UCCGCU-----UCCGGCU------CCGgUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 70293 0.66 0.850883
Target:  5'- uGGCGAcGGgCGcAGGCCcaccaaGCAGAGG-Ca -3'
miRNA:   3'- uCCGCUuCCgGC-UCCGG------UGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 70924 0.66 0.873317
Target:  5'- uGGUGAcGGCCGucaGCUACGGGcGGGCc -3'
miRNA:   3'- uCCGCUuCCGGCuc-CGGUGUUU-CCUG- -5'
3602 3' -57.8 NC_001650.1 + 71042 0.67 0.809742
Target:  5'- gAGcGCGGcGGGCCuGGGCCAgCAGaacAGGAUg -3'
miRNA:   3'- -UC-CGCU-UCCGGcUCCGGU-GUU---UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 71650 0.68 0.736245
Target:  5'- gGGGUGu-GGCCuacaGGGCCACccacAGGGGCa -3'
miRNA:   3'- -UCCGCuuCCGGc---UCCGGUGu---UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 71901 0.67 0.792138
Target:  5'- cGGCGggGGCCaGGGaCugG-GGGAUg -3'
miRNA:   3'- uCCGCuuCCGGcUCCgGugUuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 72687 0.72 0.527456
Target:  5'- uAGGCGAGGGCCaGGGCCAgguuguUAAAGucCa -3'
miRNA:   3'- -UCCGCUUCCGGcUCCGGU------GUUUCcuG- -5'
3602 3' -57.8 NC_001650.1 + 73053 0.68 0.754377
Target:  5'- aGGGUGgcGGCCaccauGGGGUCGCuguaaaacuugugAAAGGGCa -3'
miRNA:   3'- -UCCGCuuCCGG-----CUCCGGUG-------------UUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 73194 0.71 0.586697
Target:  5'- gGGGCGcAGGaGCgCGcguacuGGGCCAUggGGGACu -3'
miRNA:   3'- -UCCGC-UUC-CG-GC------UCCGGUGuuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 73285 0.72 0.512014
Target:  5'- cGGGUGGAuccuguucuuggccuGGuuGAcgaaGGCCACGGGGGACa -3'
miRNA:   3'- -UCCGCUU---------------CCggCU----CCGGUGUUUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.