miRNA display CGI


Results 101 - 120 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 73362 0.67 0.800133
Target:  5'- gAGGUGGAGGCCcugGAGGagUACAGgauguucucggacAGGACc -3'
miRNA:   3'- -UCCGCUUCCGG---CUCCg-GUGUU-------------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 73414 0.69 0.716818
Target:  5'- aAGGUGggGGCgGcccaGGGCCagcACAAcGGGCc -3'
miRNA:   3'- -UCCGCuuCCGgC----UCCGG---UGUUuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 73705 0.78 0.249717
Target:  5'- uGGCGAGcuggccguGGCUGAGGCC-CGGGGGGCc -3'
miRNA:   3'- uCCGCUU--------CCGGCUCCGGuGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 74053 0.68 0.761902
Target:  5'- uGGUGAuguacucguucaccAGGCCGuacAGGCCGCGguuguucuuGAGGAg -3'
miRNA:   3'- uCCGCU--------------UCCGGC---UCCGGUGU---------UUCCUg -5'
3602 3' -57.8 NC_001650.1 + 75437 0.72 0.517783
Target:  5'- cGGGCGAGGaagCGAGcGCCGCGAgaGGGGCu -3'
miRNA:   3'- -UCCGCUUCcg-GCUC-CGGUGUU--UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 76192 0.75 0.38341
Target:  5'- cAGGUGGAGGCCGAGuGCagggGCGucucccuGGGACg -3'
miRNA:   3'- -UCCGCUUCCGGCUC-CGg---UGUu------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 76997 0.75 0.391638
Target:  5'- gAGG-GAGGcGCaCGuGGCCAUAGAGGGCa -3'
miRNA:   3'- -UCCgCUUC-CG-GCuCCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 77024 0.7 0.626906
Target:  5'- aGGGUGGgguucAGGCCGcgcuGGGCCuCGGGGGAg -3'
miRNA:   3'- -UCCGCU-----UCCGGC----UCCGGuGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 77870 0.66 0.850104
Target:  5'- aGGGUggaGAAGGCCGcgcuGGuCCugGAgcucacgGGGACg -3'
miRNA:   3'- -UCCG---CUUCCGGCu---CC-GGugUU-------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 77943 0.7 0.616829
Target:  5'- aGGaGCGggGGCggcugCGAGGCaC-CGAGGGGCc -3'
miRNA:   3'- -UC-CGCuuCCG-----GCUCCG-GuGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 78272 0.66 0.866041
Target:  5'- uGGgGAuaGCCGAGGCCAuCAAAaaaGACa -3'
miRNA:   3'- uCCgCUucCGGCUCCGGU-GUUUc--CUG- -5'
3602 3' -57.8 NC_001650.1 + 78657 0.69 0.677189
Target:  5'- gAGGCGuuccuGGaCCGccacGGCCugGCGGAGGACg -3'
miRNA:   3'- -UCCGCuu---CC-GGCu---CCGG--UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 79075 0.67 0.792138
Target:  5'- gAGGCGucGGGCCccGGGCCugGcuccGGGCg -3'
miRNA:   3'- -UCCGCu-UCCGGc-UCCGGugUuu--CCUG- -5'
3602 3' -57.8 NC_001650.1 + 79608 0.69 0.726571
Target:  5'- gGGGCGccGcCCGGGGgCGCGAcGGGGCg -3'
miRNA:   3'- -UCCGCuuCcGGCUCCgGUGUU-UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 80327 0.73 0.4669
Target:  5'- cGGGCGAGauagcGGUCGuGGCCACAuagaucuugagguAGGGCg -3'
miRNA:   3'- -UCCGCUU-----CCGGCuCCGGUGUu------------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 80561 0.72 0.537194
Target:  5'- uGGgGAAgGGCCGccuGGGCUccGCGAAGGGCc -3'
miRNA:   3'- uCCgCUU-CCGGC---UCCGG--UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 82226 0.71 0.596718
Target:  5'- gGGGCGAggcaGGGCagcGGGCgGgGGAGGACg -3'
miRNA:   3'- -UCCGCU----UCCGgc-UCCGgUgUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 82396 0.79 0.225371
Target:  5'- gAGGCGguGGCCGAgcuGGCCaagcccgccaacugGCAGGGGACg -3'
miRNA:   3'- -UCCGCuuCCGGCU---CCGG--------------UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 82512 0.71 0.576708
Target:  5'- uGGGCGAacggGGGCgggUGGGGCgaGCGGGGGGCu -3'
miRNA:   3'- -UCCGCU----UCCG---GCUCCGg-UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 82765 0.66 0.843012
Target:  5'- cGGCG--GGCCGguacauguaguuGGGCagcaGCAGGGGGCc -3'
miRNA:   3'- uCCGCuuCCGGC------------UCCGg---UGUUUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.