miRNA display CGI


Results 121 - 140 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 83007 0.71 0.586697
Target:  5'- gGGGCuGGAGGCgGAGGUgaACAAGcGGGCc -3'
miRNA:   3'- -UCCG-CUUCCGgCUCCGg-UGUUU-CCUG- -5'
3602 3' -57.8 NC_001650.1 + 83159 0.67 0.801014
Target:  5'- uGGCGGAGGCCauccGAGGCUucc-AGGuCg -3'
miRNA:   3'- uCCGCUUCCGG----CUCCGGuguuUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 83380 0.75 0.386688
Target:  5'- uGGCG--GGCCGAGGCCcugccgucgguaccaGCuGAGGACg -3'
miRNA:   3'- uCCGCuuCCGGCUCCGG---------------UGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 83689 0.68 0.755321
Target:  5'- gAGGCuGAGGaGCCGcuGCCccgagaagaGCGAGGGGCu -3'
miRNA:   3'- -UCCG-CUUC-CGGCucCGG---------UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 84401 0.72 0.537194
Target:  5'- aGGGCGGAGGCCugagcaucGGGGUCucCAGcGGGGCg -3'
miRNA:   3'- -UCCGCUUCCGG--------CUCCGGu-GUU-UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 84963 0.67 0.818313
Target:  5'- cGGCGAAGG-UGAGGa---GGAGGGCg -3'
miRNA:   3'- uCCGCUUCCgGCUCCggugUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 84987 0.74 0.416997
Target:  5'- uGGCGggGG-CGAGGCCGagccGGGCg -3'
miRNA:   3'- uCCGCuuCCgGCUCCGGUguuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 85453 0.73 0.489214
Target:  5'- gAGGcCGAAGGCCaGGGGgCugAGGGGGu -3'
miRNA:   3'- -UCC-GCUUCCGG-CUCCgGugUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 86239 0.66 0.834955
Target:  5'- ---gGAGGGCgaCGAGGCCACcGAGGcCu -3'
miRNA:   3'- uccgCUUCCG--GCUCCGGUGuUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 87047 0.66 0.866041
Target:  5'- cAGGCaGAAGaGCUGGcaguuGGCCAgcAGGGGCu -3'
miRNA:   3'- -UCCG-CUUC-CGGCU-----CCGGUguUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 87558 0.68 0.735281
Target:  5'- cAGG-GAaagcccAGGCCcggaaagGAGGCCGCGAuGGGCa -3'
miRNA:   3'- -UCCgCU------UCCGG-------CUCCGGUGUUuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 88416 0.67 0.82672
Target:  5'- gAGGCcucGccGGCCGAGGCgGgCAAGgcGGACc -3'
miRNA:   3'- -UCCG---CuuCCGGCUCCGgU-GUUU--CCUG- -5'
3602 3' -57.8 NC_001650.1 + 88703 0.7 0.636985
Target:  5'- cGGGCGAuGGaGCgGGGGCgGgAGGGGGCu -3'
miRNA:   3'- -UCCGCU-UC-CGgCUCCGgUgUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 89191 0.66 0.873317
Target:  5'- gGGGCGAcgagaucgugAGGC--GGGCCAgGgcGGGCg -3'
miRNA:   3'- -UCCGCU----------UCCGgcUCCGGUgUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 89864 0.66 0.873317
Target:  5'- gAGGCGGugcGGGUCGuGGCgAgAGucccuGGACg -3'
miRNA:   3'- -UCCGCU---UCCGGCuCCGgUgUUu----CCUG- -5'
3602 3' -57.8 NC_001650.1 + 90101 0.71 0.576708
Target:  5'- aGGGUG-AGGCUcaGGGCCGCGuccAGGGACu -3'
miRNA:   3'- -UCCGCuUCCGGc-UCCGGUGU---UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 91555 0.71 0.596718
Target:  5'- gAGGCGGcgugcAGGCUGAGGCUGgAGucguGGAUg -3'
miRNA:   3'- -UCCGCU-----UCCGGCUCCGGUgUUu---CCUG- -5'
3602 3' -57.8 NC_001650.1 + 92041 0.71 0.583697
Target:  5'- gGGGCGGGggugggggucccucGGCCGAGuCCACGgcccAGGGGCu -3'
miRNA:   3'- -UCCGCUU--------------CCGGCUCcGGUGU----UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 92589 0.67 0.792138
Target:  5'- cAGGacugGAAGGUgGAGGCCuuGAAGGcCc -3'
miRNA:   3'- -UCCg---CUUCCGgCUCCGGugUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 94754 0.73 0.461404
Target:  5'- aGGGUGGacagggAGGCCGAGGagGCGGAGGGg -3'
miRNA:   3'- -UCCGCU------UCCGGCUCCggUGUUUCCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.