miRNA display CGI


Results 21 - 40 of 279 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 159610 0.71 0.576708
Target:  5'- cGGCGggGGCgGuGGgCAaGGGGGACc -3'
miRNA:   3'- uCCGCuuCCGgCuCCgGUgUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 159485 0.71 0.606765
Target:  5'- gAGGCGGGcGCCGAGGCUGCAGucauGAUc -3'
miRNA:   3'- -UCCGCUUcCGGCUCCGGUGUUuc--CUG- -5'
3602 3' -57.8 NC_001650.1 + 159025 0.66 0.858561
Target:  5'- cGGGC-AGGGCgGGGGaCCugAcccuccucAGGGGCa -3'
miRNA:   3'- -UCCGcUUCCGgCUCC-GGugU--------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 158294 0.7 0.657126
Target:  5'- uGGCGuugucGGGCCGGGGCaGCAucagguagauGGACa -3'
miRNA:   3'- uCCGCu----UCCGGCUCCGgUGUuu--------CCUG- -5'
3602 3' -57.8 NC_001650.1 + 158256 0.72 0.546994
Target:  5'- gGGGCuGgcGGCCgugGAGGCCugGAugcccaGGGGCa -3'
miRNA:   3'- -UCCG-CuuCCGG---CUCCGGugUU------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 158006 0.69 0.706994
Target:  5'- cGGCGuccucguAGcCCGAGGCCACGcuGGGGGu -3'
miRNA:   3'- uCCGCu------UCcGGCUCCGGUGU--UUCCUg -5'
3602 3' -57.8 NC_001650.1 + 157508 0.74 0.443335
Target:  5'- uGGGCGAGGGCgGGGGCgGgGAGGuGCc -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGgUgUUUCcUG- -5'
3602 3' -57.8 NC_001650.1 + 156217 0.7 0.616829
Target:  5'- cGGGCGAgGGGCaCGugguGGUCACGcagGGGGGCu -3'
miRNA:   3'- -UCCGCU-UCCG-GCu---CCGGUGU---UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 155849 0.67 0.783122
Target:  5'- gGGGCGuucgcGGGGCucguggugagCGGGGUCACGGGGGcGCg -3'
miRNA:   3'- -UCCGC-----UUCCG----------GCUCCGGUGUUUCC-UG- -5'
3602 3' -57.8 NC_001650.1 + 155623 0.67 0.82672
Target:  5'- aGGGgGGAGGa-GAGGUgGgGAGGGGCc -3'
miRNA:   3'- -UCCgCUUCCggCUCCGgUgUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 155048 0.73 0.449614
Target:  5'- aAGGCcuguGGGCCGAGGCUauauauaaagccccGCGGGGGAa -3'
miRNA:   3'- -UCCGcu--UCCGGCUCCGG--------------UGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 155037 0.67 0.783122
Target:  5'- gGGGUGGuaggcGGCCGAggGGUCGCAGAGcaGGCc -3'
miRNA:   3'- -UCCGCUu----CCGGCU--CCGGUGUUUC--CUG- -5'
3602 3' -57.8 NC_001650.1 + 151322 0.78 0.238133
Target:  5'- gAGGUGGAGGUCGAGGCaaaGGAGGAg -3'
miRNA:   3'- -UCCGCUUCCGGCUCCGgugUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 150984 0.67 0.82672
Target:  5'- uGGCGgcGGUgGuGGCgGCGGAGGu- -3'
miRNA:   3'- uCCGCuuCCGgCuCCGgUGUUUCCug -5'
3602 3' -57.8 NC_001650.1 + 150935 0.72 0.508183
Target:  5'- cAGGUGGAGGCgGAGGCUugGGuuuAGGu- -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGugUU---UCCug -5'
3602 3' -57.8 NC_001650.1 + 150845 0.72 0.508183
Target:  5'- cAGGUGGAGGCgGAGGCUugGGuuuAGGu- -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGugUU---UCCug -5'
3602 3' -57.8 NC_001650.1 + 150755 0.72 0.508183
Target:  5'- cAGGUGGAGGCgGAGGCUugGGuuuAGGu- -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGugUU---UCCug -5'
3602 3' -57.8 NC_001650.1 + 150672 0.67 0.798366
Target:  5'- cAGGUGGAGGCUuGGGCUuuggcucaguggagGCGGAGG-Cu -3'
miRNA:   3'- -UCCGCUUCCGGcUCCGG--------------UGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 150612 0.71 0.610789
Target:  5'- gAGGCGGAGGCUuGGGCUuuggcucagguugagGCGGAGG-Cu -3'
miRNA:   3'- -UCCGCUUCCGGcUCCGG---------------UGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 150552 0.71 0.610789
Target:  5'- gAGGCGGAGGCUuGGGCUuuggcucagguugagGCGGAGG-Cu -3'
miRNA:   3'- -UCCGCUUCCGGcUCCGG---------------UGUUUCCuG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.