miRNA display CGI


Results 41 - 60 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 150516 0.73 0.498658
Target:  5'- cAGGUGGAGGCgGAGGCUu----GGGCu -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGuguuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 150486 0.76 0.344031
Target:  5'- cAGGUGGAGGCgGAGGCCugGGuuuAGG-Cu -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGugUU---UCCuG- -5'
3602 3' -57.8 NC_001650.1 + 150456 0.73 0.498658
Target:  5'- cAGGUGGAGGCgGAGGCUu----GGGCu -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGuguuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 150426 0.76 0.344031
Target:  5'- cAGGUGGAGGCgGAGGCCugGGuuuAGG-Cu -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGugUU---UCCuG- -5'
3602 3' -57.8 NC_001650.1 + 150372 0.71 0.610789
Target:  5'- gAGGCGGAGGCUuGGGCUuaggcugagguugagGCGGAGG-Cu -3'
miRNA:   3'- -UCCGCUUCCGGcUCCGG---------------UGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 147653 0.69 0.684181
Target:  5'- gGGGUGAGccggugggaagcgcGGCCGGGaGCCGCucuGGGGGg -3'
miRNA:   3'- -UCCGCUU--------------CCGGCUC-CGGUGu--UUCCUg -5'
3602 3' -57.8 NC_001650.1 + 147161 0.66 0.861577
Target:  5'- aGGGCGAgaAucacugauugacagcGGCCGGGGCCAaugAGAGaGCa -3'
miRNA:   3'- -UCCGCU--U---------------CCGGCUCCGGUg--UUUCcUG- -5'
3602 3' -57.8 NC_001650.1 + 146677 0.71 0.596718
Target:  5'- cGGCGcccGGGCCGccuaGGGCCGCGggucuauuaGAGGAg -3'
miRNA:   3'- uCCGCu--UCCGGC----UCCGGUGU---------UUCCUg -5'
3602 3' -57.8 NC_001650.1 + 146092 0.7 0.626906
Target:  5'- -aGUGGAGGCacuuCGGGGCCGCGuacguGGACu -3'
miRNA:   3'- ucCGCUUCCG----GCUCCGGUGUuu---CCUG- -5'
3602 3' -57.8 NC_001650.1 + 145730 0.69 0.726571
Target:  5'- gAGGUGGcaGGGCgGcaGGGCCAUGgcGGGCa -3'
miRNA:   3'- -UCCGCU--UCCGgC--UCCGGUGUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 144454 0.68 0.745831
Target:  5'- gAGGUGGAGaucugCGAGGCCAUuacGGGGCu -3'
miRNA:   3'- -UCCGCUUCcg---GCUCCGGUGuu-UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 143585 0.71 0.566757
Target:  5'- aGGGCGAGGGCUG-GGUaGgGAGGGAg -3'
miRNA:   3'- -UCCGCUUCCGGCuCCGgUgUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 143547 0.67 0.801014
Target:  5'- cAGGUGGuuGCCGAucGCCAgGGAGGAUu -3'
miRNA:   3'- -UCCGCUucCGGCUc-CGGUgUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 143473 0.72 0.546994
Target:  5'- aGGGCac--GCCGAGGCCGaguuGAGGGCg -3'
miRNA:   3'- -UCCGcuucCGGCUCCGGUgu--UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 143099 0.66 0.843012
Target:  5'- cGGCugcacGGGCCGGGGCgGCGgcGGcCa -3'
miRNA:   3'- uCCGcu---UCCGGCUCCGgUGUuuCCuG- -5'
3602 3' -57.8 NC_001650.1 + 142784 0.75 0.367304
Target:  5'- aGGGCGgcGGCCG-GGCCcagACGGGGGuCa -3'
miRNA:   3'- -UCCGCuuCCGGCuCCGG---UGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 141837 0.66 0.858561
Target:  5'- -cGCGggGGCCcccGAGGCCG--AAGGuuuCa -3'
miRNA:   3'- ucCGCuuCCGG---CUCCGGUguUUCCu--G- -5'
3602 3' -57.8 NC_001650.1 + 141457 0.69 0.716818
Target:  5'- -cGCG-GGGCCGAGGgCGaacCGGGGGACc -3'
miRNA:   3'- ucCGCuUCCGGCUCCgGU---GUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 141389 0.66 0.840614
Target:  5'- cGGCG--GGCCGGGGUCACccagaguucgcgccAGGGGuCg -3'
miRNA:   3'- uCCGCuuCCGGCUCCGGUG--------------UUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 138222 0.68 0.752485
Target:  5'- gAGGUGAugccccAGGCCGAGaaCCACAgcaccgaccaggaaAAGGAUa -3'
miRNA:   3'- -UCCGCU------UCCGGCUCc-GGUGU--------------UUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.