miRNA display CGI


Results 61 - 80 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 136724 0.69 0.694133
Target:  5'- cGGUGggGGCgGuGGCgGCGgcgaccuucuuggcGGGGGCg -3'
miRNA:   3'- uCCGCuuCCGgCuCCGgUGU--------------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 136379 0.87 0.065031
Target:  5'- cGGGUcGGGGUCGAGGCCGCGGGGGGCg -3'
miRNA:   3'- -UCCGcUUCCGGCUCCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 136215 0.67 0.792138
Target:  5'- aGGGUGAAGGCCagaaacAGGCUcuGCA--GGACc -3'
miRNA:   3'- -UCCGCUUCCGGc-----UCCGG--UGUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 135997 0.68 0.773975
Target:  5'- uGGUGggGGCCcuGGCCuuuCAGAGcauGGCg -3'
miRNA:   3'- uCCGCuuCCGGcuCCGGu--GUUUC---CUG- -5'
3602 3' -57.8 NC_001650.1 + 135314 0.68 0.745831
Target:  5'- uGGCGAGGGauaccagccaCUGAGGCUACccAGGGu -3'
miRNA:   3'- uCCGCUUCC----------GGCUCCGGUGuuUCCUg -5'
3602 3' -57.8 NC_001650.1 + 134552 0.69 0.726571
Target:  5'- uGGGCGuguGGGacaCGgaGGGCCcCGGGGGGCg -3'
miRNA:   3'- -UCCGCu--UCCg--GC--UCCGGuGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 133221 0.67 0.813189
Target:  5'- cGGCGuggGGGCUGggagcGGGCCgcccgagaaaaaacaACAGGGGGCc -3'
miRNA:   3'- uCCGCu--UCCGGC-----UCCGG---------------UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 133169 0.66 0.868976
Target:  5'- cGGGCGAgcgcggaccaccggaGGGCuCGc-GCCGCGGGGGGa -3'
miRNA:   3'- -UCCGCU---------------UCCG-GCucCGGUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 133094 0.66 0.866041
Target:  5'- cGGCGAgccAGGUgCaGGGCC-CAAGGGAg -3'
miRNA:   3'- uCCGCU---UCCG-GcUCCGGuGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 131565 0.67 0.817463
Target:  5'- gGGGCGGagaaaccccgAGGCCGAGGuccugcccgugacCCACcgccaguGGGCg -3'
miRNA:   3'- -UCCGCU----------UCCGGCUCC-------------GGUGuuu----CCUG- -5'
3602 3' -57.8 NC_001650.1 + 131433 0.68 0.736245
Target:  5'- aGGGUcucGGGGaCCGGGuCCACGGAGGGCc -3'
miRNA:   3'- -UCCGc--UUCC-GGCUCcGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 130839 0.69 0.677189
Target:  5'- gAGGCGGccGCCcugcugcucGAGGCCAagacCGGGGGGCu -3'
miRNA:   3'- -UCCGCUucCGG---------CUCCGGU----GUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 130758 0.66 0.866041
Target:  5'- gAGGUGGagaagAGGCUGGGGCCcCugguGGAg -3'
miRNA:   3'- -UCCGCU-----UCCGGCUCCGGuGuuu-CCUg -5'
3602 3' -57.8 NC_001650.1 + 130679 0.7 0.657126
Target:  5'- gGGGC-AAGGCCGccguggagggguGGGUCAaaaaAAGGGACg -3'
miRNA:   3'- -UCCGcUUCCGGC------------UCCGGUg---UUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 130626 0.66 0.834955
Target:  5'- -cGUGggGGuccucaCCGAGGCCAUAGAG-ACc -3'
miRNA:   3'- ucCGCuuCC------GGCUCCGGUGUUUCcUG- -5'
3602 3' -57.8 NC_001650.1 + 130571 0.66 0.873317
Target:  5'- aGGGCaGGGGCCGuGGagcuCCACGAGuuGGAg -3'
miRNA:   3'- -UCCGcUUCCGGCuCC----GGUGUUU--CCUg -5'
3602 3' -57.8 NC_001650.1 + 130297 0.67 0.816611
Target:  5'- cGGGgGGAGGCCaacgccaggcuGGCCGCGgucaucGAGGAg -3'
miRNA:   3'- -UCCgCUUCCGGcu---------CCGGUGU------UUCCUg -5'
3602 3' -57.8 NC_001650.1 + 130007 0.75 0.351669
Target:  5'- cGGCGcGGGaCGAGGCCGCGggccucAAGGGCc -3'
miRNA:   3'- uCCGCuUCCgGCUCCGGUGU------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 129980 0.78 0.255681
Target:  5'- uGGCGcGGGCCcuGAGGCUGCuGAGGGCg -3'
miRNA:   3'- uCCGCuUCCGG--CUCCGGUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 129975 0.67 0.809742
Target:  5'- aAGGCG-GGGCCGuuGGGaaGCAu-GGACa -3'
miRNA:   3'- -UCCGCuUCCGGC--UCCggUGUuuCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.