miRNA display CGI


Results 81 - 100 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 129877 0.73 0.498658
Target:  5'- cGGC--AGGCCGAGGCCGUGGAGG-Cu -3'
miRNA:   3'- uCCGcuUCCGGCUCCGGUGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 129724 0.67 0.801014
Target:  5'- -aGUGGAGGCCGAGGU-----GGGGCu -3'
miRNA:   3'- ucCGCUUCCGGCUCCGguguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 129645 0.68 0.736245
Target:  5'- cGGUGgcGGCCGAGuuCCAgAggGAGGGCu -3'
miRNA:   3'- uCCGCuuCCGGCUCc-GGUgU--UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 129560 0.66 0.850883
Target:  5'- cGGCGggGGCUGcAGuGCU----GGGGCa -3'
miRNA:   3'- uCCGCuuCCGGC-UC-CGGuguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 129503 0.74 0.434451
Target:  5'- gAGGCGGAGGCCaagcuggagaagGAGGCCG---AGGAg -3'
miRNA:   3'- -UCCGCUUCCGG------------CUCCGGUguuUCCUg -5'
3602 3' -57.8 NC_001650.1 + 129465 0.67 0.82672
Target:  5'- uGGCGgcGGagCG-GGCCACcAGGGAg -3'
miRNA:   3'- uCCGCuuCCg-GCuCCGGUGuUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 129365 0.67 0.792138
Target:  5'- gAGGacugGAAGGCCuucgugacgGAGGCCcccaucaacaGCAugGAGGACg -3'
miRNA:   3'- -UCCg---CUUCCGG---------CUCCGG----------UGU--UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 129358 0.66 0.839811
Target:  5'- aGGGCGAagaGGGCCGcccccguguccucGGCCccgggcGCGGGGGAg -3'
miRNA:   3'- -UCCGCU---UCCGGCu------------CCGG------UGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 129133 0.69 0.706994
Target:  5'- -cGCGcccGGGGCCGAGGaCAC-GGGGGCg -3'
miRNA:   3'- ucCGC---UUCCGGCUCCgGUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 129068 0.67 0.817463
Target:  5'- -cGCGAccccgccAGGCUGGacguGGCCGCGAcGGGCu -3'
miRNA:   3'- ucCGCU-------UCCGGCU----CCGGUGUUuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 128328 0.75 0.375299
Target:  5'- gAGGCGguGGgCGAGGUgAUggGGGACc -3'
miRNA:   3'- -UCCGCuuCCgGCUCCGgUGuuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 127564 0.68 0.755321
Target:  5'- gGGGCGAGGGgggcgaCCGcccaGGGCCAgGGgguGGACu -3'
miRNA:   3'- -UCCGCUUCC------GGC----UCCGGUgUUu--CCUG- -5'
3602 3' -57.8 NC_001650.1 + 127478 0.72 0.546994
Target:  5'- aGGGCGGggacgaugGGGCCGGGGaggggggCGCcGGGGACg -3'
miRNA:   3'- -UCCGCU--------UCCGGCUCCg------GUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 126751 0.67 0.783122
Target:  5'- gGGGaCGAGcGGCgaGGGGCC-CGGGGGAa -3'
miRNA:   3'- -UCC-GCUU-CCGg-CUCCGGuGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 126621 0.68 0.736245
Target:  5'- gGGGCGAagaGGGCgguggCGAGGacgaugggauguCCGCcGAGGACg -3'
miRNA:   3'- -UCCGCU---UCCG-----GCUCC------------GGUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 125763 0.74 0.408433
Target:  5'- cGGGCGgcGGCCGuGcGCCG--AGGGACg -3'
miRNA:   3'- -UCCGCuuCCGGCuC-CGGUguUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 125635 0.66 0.858561
Target:  5'- uGGCGAucgAGGC--GGGCC-CcGAGGGCg -3'
miRNA:   3'- uCCGCU---UCCGgcUCCGGuGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 125112 0.67 0.783122
Target:  5'- cAGGCGGucagcGGcCCGAacaGCCagGCAGAGGGCg -3'
miRNA:   3'- -UCCGCUu----CC-GGCUc--CGG--UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 124296 0.75 0.375299
Target:  5'- uGGC-AGGGaCGAGGCCGCGgcGGACg -3'
miRNA:   3'- uCCGcUUCCgGCUCCGGUGUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 124081 0.66 0.866041
Target:  5'- cAGGUGGAcGuGUCaGAGGCCGacGGGGGCg -3'
miRNA:   3'- -UCCGCUU-C-CGG-CUCCGGUguUUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.