miRNA display CGI


Results 101 - 120 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 123824 0.66 0.873317
Target:  5'- uGGCccuGGCCGuGGUgAUcAAGGACa -3'
miRNA:   3'- uCCGcuuCCGGCuCCGgUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 122219 0.75 0.367304
Target:  5'- cGGCGAGGGagcuggugcCCGAGGCCG---GGGGCg -3'
miRNA:   3'- uCCGCUUCC---------GGCUCCGGUguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 122126 0.68 0.755321
Target:  5'- aGGGCGGggucggcucggGGGCgGGGGCgGCgGGAGGGg -3'
miRNA:   3'- -UCCGCU-----------UCCGgCUCCGgUG-UUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 121818 0.69 0.726571
Target:  5'- cGGCGggGGCaaCGGGGgCGC--GGGAa -3'
miRNA:   3'- uCCGCuuCCG--GCUCCgGUGuuUCCUg -5'
3602 3' -57.8 NC_001650.1 + 121615 0.67 0.783122
Target:  5'- cAGGUGcuuGAGGCgCGAGGCgGCGcccccggccGGGGCg -3'
miRNA:   3'- -UCCGC---UUCCG-GCUCCGgUGUu--------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 121556 0.69 0.706994
Target:  5'- aGGGUGGcAGGCCucgcggguGAGGCCGCAcgcguGGAa -3'
miRNA:   3'- -UCCGCU-UCCGG--------CUCCGGUGUuu---CCUg -5'
3602 3' -57.8 NC_001650.1 + 121205 0.66 0.843012
Target:  5'- cGGCGGAcGGUgGAGGCCuuccuGGAg -3'
miRNA:   3'- uCCGCUU-CCGgCUCCGGuguuuCCUg -5'
3602 3' -57.8 NC_001650.1 + 120910 0.66 0.834955
Target:  5'- aAGGUGAcagguuGGCUGAGGuCCAgGGAGcGCa -3'
miRNA:   3'- -UCCGCUu-----CCGGCUCC-GGUgUUUCcUG- -5'
3602 3' -57.8 NC_001650.1 + 120819 0.66 0.873317
Target:  5'- uGGCGggGGCgGGGGUgcccucGGGCg -3'
miRNA:   3'- uCCGCuuCCGgCUCCGguguuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 119228 0.66 0.850883
Target:  5'- cGGCGGgguGGGaCCugGAGGCCAac-AGGAUg -3'
miRNA:   3'- uCCGCU---UCC-GG--CUCCGGUguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 118014 0.72 0.537194
Target:  5'- gGGGCGAGGgggaggguGCCGGGGCaGCGggagaggggGAGGGCg -3'
miRNA:   3'- -UCCGCUUC--------CGGCUCCGgUGU---------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 116461 0.73 0.498658
Target:  5'- cGGGCGGGuGuCCGAGGCCAagaccAGGGCg -3'
miRNA:   3'- -UCCGCUUcC-GGCUCCGGUguu--UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 115865 0.72 0.537194
Target:  5'- uGGGCGguGGCUGAGuGCCguACAccGGGCc -3'
miRNA:   3'- -UCCGCuuCCGGCUC-CGG--UGUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 115762 0.69 0.726571
Target:  5'- -uGCGAuGGCCGAGGagAUGGAGGAa -3'
miRNA:   3'- ucCGCUuCCGGCUCCggUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 114599 0.72 0.527456
Target:  5'- cAGGUGAcGGCaggugcuGGCCACcGAGGACa -3'
miRNA:   3'- -UCCGCUuCCGgcu----CCGGUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 111938 0.66 0.858561
Target:  5'- uGGUGugcGGCgCGGGGCgCAUccAGGACg -3'
miRNA:   3'- uCCGCuu-CCG-GCUCCG-GUGuuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 111483 0.67 0.801014
Target:  5'- gGGGCGGGcacugcugcGGgCGAGGCCcCAGauucuggcccuGGGGCa -3'
miRNA:   3'- -UCCGCUU---------CCgGCUCCGGuGUU-----------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 111403 0.73 0.45232
Target:  5'- gGGGCGcGGGCCGccugagccgccuGGGCCugAcuGGGACc -3'
miRNA:   3'- -UCCGCuUCCGGC------------UCCGGugUu-UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 111098 0.73 0.461404
Target:  5'- aGGcGCGAGGGCgGcGGUCGCGAcgcGGGGCa -3'
miRNA:   3'- -UC-CGCUUCCGgCuCCGGUGUU---UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 111084 0.66 0.834955
Target:  5'- cGGCGgcGGCgauaGGGGCCcguagcugaaAAGGGGCg -3'
miRNA:   3'- uCCGCuuCCGg---CUCCGGug--------UUUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.