miRNA display CGI


Results 41 - 60 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 129980 0.78 0.255681
Target:  5'- uGGCGcGGGCCcuGAGGCUGCuGAGGGCg -3'
miRNA:   3'- uCCGCuUCCGG--CUCCGGUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 151322 0.78 0.238133
Target:  5'- gAGGUGGAGGUCGAGGCaaaGGAGGAg -3'
miRNA:   3'- -UCCGCUUCCGGCUCCGgugUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 82396 0.79 0.225371
Target:  5'- gAGGCGguGGCCGAgcuGGCCaagcccgccaacugGCAGGGGACg -3'
miRNA:   3'- -UCCGCuuCCGGCU---CCGG--------------UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 68805 0.79 0.221604
Target:  5'- gGGGC--AGGCCGGGGCCcucgcuCGAGGGGCg -3'
miRNA:   3'- -UCCGcuUCCGGCUCCGGu-----GUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 21799 0.79 0.211135
Target:  5'- aGGGCGccGGCCGAGGCC-CcGGGGAg -3'
miRNA:   3'- -UCCGCuuCCGGCUCCGGuGuUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 30707 0.75 0.359427
Target:  5'- gGGGCGGgagagcgagAGG-CGGGGCCGCG-AGGACg -3'
miRNA:   3'- -UCCGCU---------UCCgGCUCCGGUGUuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 122219 0.75 0.367304
Target:  5'- cGGCGAGGGagcuggugcCCGAGGCCG---GGGGCg -3'
miRNA:   3'- uCCGCUUCC---------GGCUCCGGUguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 35 0.73 0.45232
Target:  5'- cGGGgGGAGaGaacaCGggGGGCCACAAAGGGCg -3'
miRNA:   3'- -UCCgCUUC-Cg---GC--UCCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 129503 0.74 0.434451
Target:  5'- gAGGCGGAGGCCaagcuggagaagGAGGCCG---AGGAg -3'
miRNA:   3'- -UCCGCUUCCGG------------CUCCGGUguuUCCUg -5'
3602 3' -57.8 NC_001650.1 + 37590 0.74 0.425671
Target:  5'- cGGGCGgcGGCCGAGcgccugugcGCCAUGAGGGu- -3'
miRNA:   3'- -UCCGCuuCCGGCUC---------CGGUGUUUCCug -5'
3602 3' -57.8 NC_001650.1 + 84987 0.74 0.416997
Target:  5'- uGGCGggGG-CGAGGCCGagccGGGCg -3'
miRNA:   3'- uCCGCuuCCgGCUCCGGUguuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 52789 0.74 0.408433
Target:  5'- cGGCGgcGGCCcucGGGGCCcggGCGcAGGACg -3'
miRNA:   3'- uCCGCuuCCGG---CUCCGG---UGUuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 66889 0.74 0.399979
Target:  5'- gGGGCGAgccggGGGCCGGGGa-GCAuGGGGCc -3'
miRNA:   3'- -UCCGCU-----UCCGGCUCCggUGUuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 31253 0.74 0.399979
Target:  5'- gGGGCGAaggGGGCgGAGGCCAUugccGACg -3'
miRNA:   3'- -UCCGCU---UCCGgCUCCGGUGuuucCUG- -5'
3602 3' -57.8 NC_001650.1 + 57967 0.75 0.391638
Target:  5'- gAGGCGc-GGCCGGGGCguCGAuGGGCu -3'
miRNA:   3'- -UCCGCuuCCGGCUCCGguGUUuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 83380 0.75 0.386688
Target:  5'- uGGCG--GGCCGAGGCCcugccgucgguaccaGCuGAGGACg -3'
miRNA:   3'- uCCGCuuCCGGCUCCGG---------------UGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 76192 0.75 0.38341
Target:  5'- cAGGUGGAGGCCGAGuGCagggGCGucucccuGGGACg -3'
miRNA:   3'- -UCCGCUUCCGGCUC-CGg---UGUu------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 128328 0.75 0.375299
Target:  5'- gAGGCGguGGgCGAGGUgAUggGGGACc -3'
miRNA:   3'- -UCCGCuuCCgGCUCCGgUGuuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 124296 0.75 0.375299
Target:  5'- uGGC-AGGGaCGAGGCCGCGgcGGACg -3'
miRNA:   3'- uCCGcUUCCgGCUCCGGUGUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 142784 0.75 0.367304
Target:  5'- aGGGCGgcGGCCG-GGCCcagACGGGGGuCa -3'
miRNA:   3'- -UCCGCuuCCGGCuCCGG---UGUUUCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.