miRNA display CGI


Results 81 - 100 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 35278 0.72 0.537194
Target:  5'- uGGGCGGggcGGGCCGGGGacgggCGCGGgccAGGGCc -3'
miRNA:   3'- -UCCGCU---UCCGGCUCCg----GUGUU---UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 84401 0.72 0.537194
Target:  5'- aGGGCGGAGGCCugagcaucGGGGUCucCAGcGGGGCg -3'
miRNA:   3'- -UCCGCUUCCGG--------CUCCGGu-GUU-UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 115865 0.72 0.537194
Target:  5'- uGGGCGguGGCUGAGuGCCguACAccGGGCc -3'
miRNA:   3'- -UCCGCuuCCGGCUC-CGG--UGUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 127478 0.72 0.546994
Target:  5'- aGGGCGGggacgaugGGGCCGGGGaggggggCGCcGGGGACg -3'
miRNA:   3'- -UCCGCU--------UCCGGCUCCg------GUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 158256 0.72 0.546994
Target:  5'- gGGGCuGgcGGCCgugGAGGCCugGAugcccaGGGGCa -3'
miRNA:   3'- -UCCG-CuuCCGG---CUCCGGugUU------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 165468 0.72 0.546994
Target:  5'- aAGGCGAGcGGcCCGAGGaaGCAcccGGGGCg -3'
miRNA:   3'- -UCCGCUU-CC-GGCUCCggUGUu--UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 60276 0.71 0.55685
Target:  5'- cGGCugcugcGGCUGAGGCCGCu--GGGCg -3'
miRNA:   3'- uCCGcuu---CCGGCUCCGGUGuuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 150935 0.72 0.508183
Target:  5'- cAGGUGGAGGCgGAGGCUugGGuuuAGGu- -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGugUU---UCCug -5'
3602 3' -57.8 NC_001650.1 + 150845 0.72 0.508183
Target:  5'- cAGGUGGAGGCgGAGGCUugGGuuuAGGu- -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGugUU---UCCug -5'
3602 3' -57.8 NC_001650.1 + 150755 0.72 0.508183
Target:  5'- cAGGUGGAGGCgGAGGCUugGGuuuAGGu- -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGugUU---UCCug -5'
3602 3' -57.8 NC_001650.1 + 129503 0.74 0.434451
Target:  5'- gAGGCGGAGGCCaagcuggagaagGAGGCCG---AGGAg -3'
miRNA:   3'- -UCCGCUUCCGG------------CUCCGGUguuUCCUg -5'
3602 3' -57.8 NC_001650.1 + 35 0.73 0.45232
Target:  5'- cGGGgGGAGaGaacaCGggGGGCCACAAAGGGCg -3'
miRNA:   3'- -UCCgCUUC-Cg---GC--UCCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 166742 0.73 0.45232
Target:  5'- cGGGgGGAGaGaacaCGggGGGCCACAAAGGGCg -3'
miRNA:   3'- -UCCgCUUC-Cg---GC--UCCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 24075 0.73 0.461404
Target:  5'- uGGGCGGcccuGGCCGAgauGGCCAUGgcGGGGAUg -3'
miRNA:   3'- -UCCGCUu---CCGGCU---CCGGUGU--UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 111098 0.73 0.461404
Target:  5'- aGGcGCGAGGGCgGcGGUCGCGAcgcGGGGCa -3'
miRNA:   3'- -UC-CGCUUCCGgCuCCGGUGUU---UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 129877 0.73 0.498658
Target:  5'- cGGC--AGGCCGAGGCCGUGGAGG-Cu -3'
miRNA:   3'- uCCGcuUCCGGCUCCGGUGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 150456 0.73 0.498658
Target:  5'- cAGGUGGAGGCgGAGGCUu----GGGCu -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGuguuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 150516 0.73 0.498658
Target:  5'- cAGGUGGAGGCgGAGGCUu----GGGCu -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGuguuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 58100 0.73 0.498658
Target:  5'- -cGCcGGGGCCuGGGCCGCGAAGGGu -3'
miRNA:   3'- ucCGcUUCCGGcUCCGGUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 69229 0.71 0.566757
Target:  5'- cGGGCGcugGAGGCCGGGGgCGagUAGAGcGGCg -3'
miRNA:   3'- -UCCGC---UUCCGGCUCCgGU--GUUUC-CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.