miRNA display CGI


Results 101 - 120 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 82226 0.71 0.596718
Target:  5'- gGGGCGAggcaGGGCagcGGGCgGgGGAGGACg -3'
miRNA:   3'- -UCCGCU----UCCGgc-UCCGgUgUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 91555 0.71 0.596718
Target:  5'- gAGGCGGcgugcAGGCUGAGGCUGgAGucguGGAUg -3'
miRNA:   3'- -UCCGCU-----UCCGGCUCCGGUgUUu---CCUG- -5'
3602 3' -57.8 NC_001650.1 + 159485 0.71 0.606765
Target:  5'- gAGGCGGGcGCCGAGGCUGCAGucauGAUc -3'
miRNA:   3'- -UCCGCUUcCGGCUCCGGUGUUuc--CUG- -5'
3602 3' -57.8 NC_001650.1 + 165747 0.71 0.606765
Target:  5'- gGGGCGGcucuuAGGCCuaggGGGGCCugu-GGGACa -3'
miRNA:   3'- -UCCGCU-----UCCGG----CUCCGGuguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 150372 0.71 0.610789
Target:  5'- gAGGCGGAGGCUuGGGCUuaggcugagguugagGCGGAGG-Cu -3'
miRNA:   3'- -UCCGCUUCCGGcUCCGG---------------UGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 127478 0.72 0.546994
Target:  5'- aGGGCGGggacgaugGGGCCGGGGaggggggCGCcGGGGACg -3'
miRNA:   3'- -UCCGCU--------UCCGGCUCCg------GUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 115865 0.72 0.537194
Target:  5'- uGGGCGguGGCUGAGuGCCguACAccGGGCc -3'
miRNA:   3'- -UCCGCuuCCGGCUC-CGG--UGUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 111098 0.73 0.461404
Target:  5'- aGGcGCGAGGGCgGcGGUCGCGAcgcGGGGCa -3'
miRNA:   3'- -UC-CGCUUCCGgCuCCGGUGUU---UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 129877 0.73 0.498658
Target:  5'- cGGC--AGGCCGAGGCCGUGGAGG-Cu -3'
miRNA:   3'- uCCGcuUCCGGCUCCGGUGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 150456 0.73 0.498658
Target:  5'- cAGGUGGAGGCgGAGGCUu----GGGCu -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGuguuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 150516 0.73 0.498658
Target:  5'- cAGGUGGAGGCgGAGGCUu----GGGCu -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGuguuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 58100 0.73 0.498658
Target:  5'- -cGCcGGGGCCuGGGCCGCGAAGGGu -3'
miRNA:   3'- ucCGcUUCCGGcUCCGGUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 150755 0.72 0.508183
Target:  5'- cAGGUGGAGGCgGAGGCUugGGuuuAGGu- -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGugUU---UCCug -5'
3602 3' -57.8 NC_001650.1 + 150845 0.72 0.508183
Target:  5'- cAGGUGGAGGCgGAGGCUugGGuuuAGGu- -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGugUU---UCCug -5'
3602 3' -57.8 NC_001650.1 + 150935 0.72 0.508183
Target:  5'- cAGGUGGAGGCgGAGGCUugGGuuuAGGu- -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGGugUU---UCCug -5'
3602 3' -57.8 NC_001650.1 + 21525 0.72 0.517783
Target:  5'- gGGGCuacugcuggGAGGGCCGcGGCUGCGGuGGACc -3'
miRNA:   3'- -UCCG---------CUUCCGGCuCCGGUGUUuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 75437 0.72 0.517783
Target:  5'- cGGGCGAGGaagCGAGcGCCGCGAgaGGGGCu -3'
miRNA:   3'- -UCCGCUUCcg-GCUC-CGGUGUU--UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 114599 0.72 0.527456
Target:  5'- cAGGUGAcGGCaggugcuGGCCACcGAGGACa -3'
miRNA:   3'- -UCCGCUuCCGgcu----CCGGUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 35278 0.72 0.537194
Target:  5'- uGGGCGGggcGGGCCGGGGacgggCGCGGgccAGGGCc -3'
miRNA:   3'- -UCCGCU---UCCGGCUCCg----GUGUU---UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 84401 0.72 0.537194
Target:  5'- aGGGCGGAGGCCugagcaucGGGGUCucCAGcGGGGCg -3'
miRNA:   3'- -UCCGCUUCCGG--------CUCCGGu-GUU-UCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.