miRNA display CGI


Results 21 - 40 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 630 0.72 0.508183
Target:  5'- gGGGgGAGuGGCUGGGGUguugUGCAAGGGGCg -3'
miRNA:   3'- -UCCgCUU-CCGGCUCCG----GUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 116461 0.73 0.498658
Target:  5'- cGGGCGGGuGuCCGAGGCCAagaccAGGGCg -3'
miRNA:   3'- -UCCGCUUcC-GGCUCCGGUguu--UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 125763 0.74 0.408433
Target:  5'- cGGGCGgcGGCCGuGcGCCG--AGGGACg -3'
miRNA:   3'- -UCCGCuuCCGGCuC-CGGUguUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 56686 0.79 0.227002
Target:  5'- uGGGCGccagcuGGGCUGGGGUCAgCGAGGGGCg -3'
miRNA:   3'- -UCCGCu-----UCCGGCUCCGGU-GUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 73194 0.71 0.586697
Target:  5'- gGGGCGcAGGaGCgCGcguacuGGGCCAUggGGGACu -3'
miRNA:   3'- -UCCGC-UUC-CG-GC------UCCGGUGuuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 118014 0.72 0.537194
Target:  5'- gGGGCGAGGgggaggguGCCGGGGCaGCGggagaggggGAGGGCg -3'
miRNA:   3'- -UCCGCUUC--------CGGCUCCGgUGU---------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 85453 0.73 0.489214
Target:  5'- gAGGcCGAAGGCCaGGGGgCugAGGGGGu -3'
miRNA:   3'- -UCC-GCUUCCGG-CUCCgGugUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 136379 0.87 0.065031
Target:  5'- cGGGUcGGGGUCGAGGCCGCGGGGGGCg -3'
miRNA:   3'- -UCCGcUUCCGGCUCCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 80561 0.72 0.537194
Target:  5'- uGGgGAAgGGCCGccuGGGCUccGCGAAGGGCc -3'
miRNA:   3'- uCCgCUU-CCGGC---UCCGG--UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 50543 0.89 0.047247
Target:  5'- gGGGCucgaGGAGGCCGGGGCCGgGAGGGACg -3'
miRNA:   3'- -UCCG----CUUCCGGCUCCGGUgUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 69860 0.73 0.489214
Target:  5'- aGGGCGAaagagAGGUCGAugaggcGGCgGCGAAGGAa -3'
miRNA:   3'- -UCCGCU-----UCCGGCU------CCGgUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 73285 0.72 0.512014
Target:  5'- cGGGUGGAuccuguucuuggccuGGuuGAcgaaGGCCACGGGGGACa -3'
miRNA:   3'- -UCCGCUU---------------CCggCU----CCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 111403 0.73 0.45232
Target:  5'- gGGGCGcGGGCCGccugagccgccuGGGCCugAcuGGGACc -3'
miRNA:   3'- -UCCGCuUCCGGC------------UCCGGugUu-UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 23788 0.74 0.434451
Target:  5'- uGGCuauGggGGCCaGGGCCAgGcuGAGGACg -3'
miRNA:   3'- uCCG---CuuCCGGcUCCGGUgU--UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 98038 0.76 0.326918
Target:  5'- cGGGCGAGGGCgaugcuucuggggaCGAgGGUCACGAAGGGg -3'
miRNA:   3'- -UCCGCUUCCG--------------GCU-CCGGUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 73705 0.78 0.249717
Target:  5'- uGGCGAGcuggccguGGCUGAGGCC-CGGGGGGCc -3'
miRNA:   3'- uCCGCUU--------CCGGCUCCGGuGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 146092 0.7 0.626906
Target:  5'- -aGUGGAGGCacuuCGGGGCCGCGuacguGGACu -3'
miRNA:   3'- ucCGCUUCCG----GCUCCGGUGUuu---CCUG- -5'
3602 3' -57.8 NC_001650.1 + 47661 0.71 0.596718
Target:  5'- gGGGCGAGGG-UGAGaGCCugGAcacGGGCg -3'
miRNA:   3'- -UCCGCUUCCgGCUC-CGGugUUu--CCUG- -5'
3602 3' -57.8 NC_001650.1 + 82512 0.71 0.576708
Target:  5'- uGGGCGAacggGGGCgggUGGGGCgaGCGGGGGGCu -3'
miRNA:   3'- -UCCGCU----UCCG---GCUCCGg-UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 143473 0.72 0.546994
Target:  5'- aGGGCac--GCCGAGGCCGaguuGAGGGCg -3'
miRNA:   3'- -UCCGcuucCGGCUCCGGUgu--UUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.