miRNA display CGI


Results 61 - 80 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 47661 0.71 0.596718
Target:  5'- gGGGCGAGGG-UGAGaGCCugGAcacGGGCg -3'
miRNA:   3'- -UCCGCUUCCgGCUC-CGGugUUu--CCUG- -5'
3602 3' -57.8 NC_001650.1 + 27804 0.7 0.647062
Target:  5'- ---aGAGGGCCGAGGCgggCACGcccgggaagGAGGGCa -3'
miRNA:   3'- uccgCUUCCGGCUCCG---GUGU---------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 61079 0.77 0.287263
Target:  5'- gAGGUGcuGGCCucGGCCACcGAGGACu -3'
miRNA:   3'- -UCCGCuuCCGGcuCCGGUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 61344 0.75 0.38341
Target:  5'- cGGCGggGGaCCcgGGGGCgGCGGGGGAg -3'
miRNA:   3'- uCCGCuuCC-GG--CUCCGgUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 157508 0.74 0.443335
Target:  5'- uGGGCGAGGGCgGGGGCgGgGAGGuGCc -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGgUgUUUCcUG- -5'
3602 3' -57.8 NC_001650.1 + 94754 0.73 0.461404
Target:  5'- aGGGUGGacagggAGGCCGAGGagGCGGAGGGg -3'
miRNA:   3'- -UCCGCU------UCCGGCUCCggUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 57628 0.73 0.498658
Target:  5'- uGGgGGAGuGCCGugcgcgcccGGGCCGCAGGGGGu -3'
miRNA:   3'- uCCgCUUC-CGGC---------UCCGGUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 73285 0.72 0.512014
Target:  5'- cGGGUGGAuccuguucuuggccuGGuuGAcgaaGGCCACGGGGGACa -3'
miRNA:   3'- -UCCGCUU---------------CCggCU----CCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 118014 0.72 0.537194
Target:  5'- gGGGCGAGGgggaggguGCCGGGGCaGCGggagaggggGAGGGCg -3'
miRNA:   3'- -UCCGCUUC--------CGGCUCCGgUGU---------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 90101 0.71 0.576708
Target:  5'- aGGGUG-AGGCUcaGGGCCGCGuccAGGGACu -3'
miRNA:   3'- -UCCGCuUCCGGc-UCCGGUGU---UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 4381 0.67 0.801014
Target:  5'- aGGGCccguccaaugGGAGGCCGGGGaCCcCu--GGACu -3'
miRNA:   3'- -UCCG----------CUUCCGGCUCC-GGuGuuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 83159 0.67 0.801014
Target:  5'- uGGCGGAGGCCauccGAGGCUucc-AGGuCg -3'
miRNA:   3'- uCCGCUUCCGG----CUCCGGuguuUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 136724 0.69 0.694133
Target:  5'- cGGUGggGGCgGuGGCgGCGgcgaccuucuuggcGGGGGCg -3'
miRNA:   3'- uCCGCuuCCGgCuCCGgUGU--------------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 121556 0.69 0.706994
Target:  5'- aGGGUGGcAGGCCucgcggguGAGGCCGCAcgcguGGAa -3'
miRNA:   3'- -UCCGCU-UCCGG--------CUCCGGUGUuu---CCUg -5'
3602 3' -57.8 NC_001650.1 + 115762 0.69 0.726571
Target:  5'- -uGCGAuGGCCGAGGagAUGGAGGAa -3'
miRNA:   3'- ucCGCUuCCGGCUCCggUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 21647 0.68 0.736245
Target:  5'- aAGGCGAAGG---AGGaCACGGGGGGCu -3'
miRNA:   3'- -UCCGCUUCCggcUCCgGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 31925 0.68 0.745831
Target:  5'- cGGCGucgagacaauAGGCCaGGGCCACGuugucAGGAa -3'
miRNA:   3'- uCCGCu---------UCCGGcUCCGGUGUu----UCCUg -5'
3602 3' -57.8 NC_001650.1 + 22239 0.68 0.755321
Target:  5'- uGGgGuGGGCCaGGGCCGgGAcGGGCa -3'
miRNA:   3'- uCCgCuUCCGGcUCCGGUgUUuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 102730 0.68 0.773975
Target:  5'- aGGGCuGGGGCUGcGGCUGCAucgcGGGCu -3'
miRNA:   3'- -UCCGcUUCCGGCuCCGGUGUuu--CCUG- -5'
3602 3' -57.8 NC_001650.1 + 121615 0.67 0.783122
Target:  5'- cAGGUGcuuGAGGCgCGAGGCgGCGcccccggccGGGGCg -3'
miRNA:   3'- -UCCGC---UUCCG-GCUCCGgUGUu--------UCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.