Results 81 - 100 of 279 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3602 | 3' | -57.8 | NC_001650.1 | + | 109242 | 0.69 | 0.706994 |
Target: 5'- cAGGCucAGGCCG-GGCUuuuuCAGGGGGa -3' miRNA: 3'- -UCCGcuUCCGGCuCCGGu---GUUUCCUg -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 134552 | 0.69 | 0.726571 |
Target: 5'- uGGGCGuguGGGacaCGgaGGGCCcCGGGGGGCg -3' miRNA: 3'- -UCCGCu--UCCg--GC--UCCGGuGUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 174972 | 0.68 | 0.736245 |
Target: 5'- uAGGCGggGGCCaauggGGGGCCugu-GGGu- -3' miRNA: 3'- -UCCGCuuCCGG-----CUCCGGuguuUCCug -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 135314 | 0.68 | 0.745831 |
Target: 5'- uGGCGAGGGauaccagccaCUGAGGCUACccAGGGu -3' miRNA: 3'- uCCGCUUCC----------GGCUCCGGUGuuUCCUg -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 138222 | 0.68 | 0.752485 |
Target: 5'- gAGGUGAugccccAGGCCGAGaaCCACAgcaccgaccaggaaAAGGAUa -3' miRNA: 3'- -UCCGCU------UCCGGCUCc-GGUGU--------------UUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 102730 | 0.68 | 0.773975 |
Target: 5'- aGGGCuGGGGCUGcGGCUGCAucgcGGGCu -3' miRNA: 3'- -UCCGcUUCCGGCuCCGGUGUuu--CCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 121615 | 0.67 | 0.783122 |
Target: 5'- cAGGUGcuuGAGGCgCGAGGCgGCGcccccggccGGGGCg -3' miRNA: 3'- -UCCGC---UUCCG-GCUCCGgUGUu--------UCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 90101 | 0.71 | 0.576708 |
Target: 5'- aGGGUG-AGGCUcaGGGCCGCGuccAGGGACu -3' miRNA: 3'- -UCCGCuUCCGGc-UCCGGUGU---UUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 118014 | 0.72 | 0.537194 |
Target: 5'- gGGGCGAGGgggaggguGCCGGGGCaGCGggagaggggGAGGGCg -3' miRNA: 3'- -UCCGCUUC--------CGGCUCCGgUGU---------UUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 73285 | 0.72 | 0.512014 |
Target: 5'- cGGGUGGAuccuguucuuggccuGGuuGAcgaaGGCCACGGGGGACa -3' miRNA: 3'- -UCCGCUU---------------CCggCU----CCGGUGUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 129975 | 0.67 | 0.809742 |
Target: 5'- aAGGCG-GGGCCGuuGGGaaGCAu-GGACa -3' miRNA: 3'- -UCCGCuUCCGGC--UCCggUGUuuCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 63563 | 0.67 | 0.818313 |
Target: 5'- -cGCGAGGGCCaGgaaaugcucgaAGGCCAgguacccguucuUAAGGGACa -3' miRNA: 3'- ucCGCUUCCGG-C-----------UCCGGU------------GUUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 129465 | 0.67 | 0.82672 |
Target: 5'- uGGCGgcGGagCG-GGCCACcAGGGAg -3' miRNA: 3'- uCCGCuuCCg-GCuCCGGUGuUUCCUg -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 120910 | 0.66 | 0.834955 |
Target: 5'- aAGGUGAcagguuGGCUGAGGuCCAgGGAGcGCa -3' miRNA: 3'- -UCCGCUu-----CCGGCUCC-GGUgUUUCcUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 16537 | 0.66 | 0.834955 |
Target: 5'- -uGUGAGGGUCcucugucaauggGuGGCCACAGAGGGu -3' miRNA: 3'- ucCGCUUCCGG------------CuCCGGUGUUUCCUg -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 61079 | 0.77 | 0.287263 |
Target: 5'- gAGGUGcuGGCCucGGCCACcGAGGACu -3' miRNA: 3'- -UCCGCuuCCGGcuCCGGUGuUUCCUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 61344 | 0.75 | 0.38341 |
Target: 5'- cGGCGggGGaCCcgGGGGCgGCGGGGGAg -3' miRNA: 3'- uCCGCuuCC-GG--CUCCGgUGUUUCCUg -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 157508 | 0.74 | 0.443335 |
Target: 5'- uGGGCGAGGGCgGGGGCgGgGAGGuGCc -3' miRNA: 3'- -UCCGCUUCCGgCUCCGgUgUUUCcUG- -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 94754 | 0.73 | 0.461404 |
Target: 5'- aGGGUGGacagggAGGCCGAGGagGCGGAGGGg -3' miRNA: 3'- -UCCGCU------UCCGGCUCCggUGUUUCCUg -5' |
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3602 | 3' | -57.8 | NC_001650.1 | + | 57628 | 0.73 | 0.498658 |
Target: 5'- uGGgGGAGuGCCGugcgcgcccGGGCCGCAGGGGGu -3' miRNA: 3'- uCCgCUUC-CGGC---------UCCGGUGUUUCCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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