miRNA display CGI


Results 101 - 120 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 183244 0.66 0.834955
Target:  5'- -uGUGAGGGUCcucugucaauggGuGGCCACAGAGGGu -3'
miRNA:   3'- ucCGCUUCCGG------------CuCCGGUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 8435 0.66 0.834955
Target:  5'- gAGGgGGAGGCauuGGCCGgugGAGGGCc -3'
miRNA:   3'- -UCCgCUUCCGgcuCCGGUgu-UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 170945 0.66 0.842215
Target:  5'- uGGC--AGGCCGAguuccccauuucuGGCCAauGGGGACu -3'
miRNA:   3'- uCCGcuUCCGGCU-------------CCGGUguUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 164777 0.66 0.843012
Target:  5'- gAGGCGAggGGGCCc-GGCCGguuGGGAa -3'
miRNA:   3'- -UCCGCU--UCCGGcuCCGGUguuUCCUg -5'
3602 3' -57.8 NC_001650.1 + 160207 0.66 0.850883
Target:  5'- gGGGuUGAGGaGCaaaGAGGCCACuAGGuGGCc -3'
miRNA:   3'- -UCC-GCUUC-CGg--CUCCGGUGuUUC-CUG- -5'
3602 3' -57.8 NC_001650.1 + 135314 0.68 0.745831
Target:  5'- uGGCGAGGGauaccagccaCUGAGGCUACccAGGGu -3'
miRNA:   3'- uCCGCUUCC----------GGCUCCGGUGuuUCCUg -5'
3602 3' -57.8 NC_001650.1 + 174972 0.68 0.736245
Target:  5'- uAGGCGggGGCCaauggGGGGCCugu-GGGu- -3'
miRNA:   3'- -UCCGCuuCCGG-----CUCCGGuguuUCCug -5'
3602 3' -57.8 NC_001650.1 + 61079 0.77 0.287263
Target:  5'- gAGGUGcuGGCCucGGCCACcGAGGACu -3'
miRNA:   3'- -UCCGCuuCCGGcuCCGGUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 61344 0.75 0.38341
Target:  5'- cGGCGggGGaCCcgGGGGCgGCGGGGGAg -3'
miRNA:   3'- uCCGCuuCC-GG--CUCCGgUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 157508 0.74 0.443335
Target:  5'- uGGGCGAGGGCgGGGGCgGgGAGGuGCc -3'
miRNA:   3'- -UCCGCUUCCGgCUCCGgUgUUUCcUG- -5'
3602 3' -57.8 NC_001650.1 + 94754 0.73 0.461404
Target:  5'- aGGGUGGacagggAGGCCGAGGagGCGGAGGGg -3'
miRNA:   3'- -UCCGCU------UCCGGCUCCggUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 57628 0.73 0.498658
Target:  5'- uGGgGGAGuGCCGugcgcgcccGGGCCGCAGGGGGu -3'
miRNA:   3'- uCCgCUUC-CGGC---------UCCGGUGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 73285 0.72 0.512014
Target:  5'- cGGGUGGAuccuguucuuggccuGGuuGAcgaaGGCCACGGGGGACa -3'
miRNA:   3'- -UCCGCUU---------------CCggCU----CCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 118014 0.72 0.537194
Target:  5'- gGGGCGAGGgggaggguGCCGGGGCaGCGggagaggggGAGGGCg -3'
miRNA:   3'- -UCCGCUUC--------CGGCUCCGgUGU---------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 90101 0.71 0.576708
Target:  5'- aGGGUG-AGGCUcaGGGCCGCGuccAGGGACu -3'
miRNA:   3'- -UCCGCuUCCGGc-UCCGGUGU---UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 146677 0.71 0.596718
Target:  5'- cGGCGcccGGGCCGccuaGGGCCGCGggucuauuaGAGGAg -3'
miRNA:   3'- uCCGCu--UCCGGC----UCCGGUGU---------UUCCUg -5'
3602 3' -57.8 NC_001650.1 + 19029 0.7 0.636985
Target:  5'- uGGCcGAGGCCGugcuGGCCAgcAGGGAa -3'
miRNA:   3'- uCCGcUUCCGGCu---CCGGUguUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 66731 0.69 0.691152
Target:  5'- cAGGCGGAggaguucagagagacGGuCCGGGGCCuGCGgugcaagcucGAGGACu -3'
miRNA:   3'- -UCCGCUU---------------CC-GGCUCCGG-UGU----------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 109242 0.69 0.706994
Target:  5'- cAGGCucAGGCCG-GGCUuuuuCAGGGGGa -3'
miRNA:   3'- -UCCGcuUCCGGCuCCGGu---GUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 134552 0.69 0.726571
Target:  5'- uGGGCGuguGGGacaCGgaGGGCCcCGGGGGGCg -3'
miRNA:   3'- -UCCGCu--UCCg--GC--UCCGGuGUUUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.