miRNA display CGI


Results 121 - 140 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 131433 0.68 0.736245
Target:  5'- aGGGUcucGGGGaCCGGGuCCACGGAGGGCc -3'
miRNA:   3'- -UCCGc--UUCC-GGCUCcGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 150612 0.71 0.610789
Target:  5'- gAGGCGGAGGCUuGGGCUuuggcucagguugagGCGGAGG-Cu -3'
miRNA:   3'- -UCCGCUUCCGGcUCCGG---------------UGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 166742 0.73 0.45232
Target:  5'- cGGGgGGAGaGaacaCGggGGGCCACAAAGGGCg -3'
miRNA:   3'- -UCCgCUUC-Cg---GC--UCCGGUGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 131565 0.67 0.817463
Target:  5'- gGGGCGGagaaaccccgAGGCCGAGGuccugcccgugacCCACcgccaguGGGCg -3'
miRNA:   3'- -UCCGCU----------UCCGGCUCC-------------GGUGuuu----CCUG- -5'
3602 3' -57.8 NC_001650.1 + 24075 0.73 0.461404
Target:  5'- uGGGCGGcccuGGCCGAgauGGCCAUGgcGGGGAUg -3'
miRNA:   3'- -UCCGCUu---CCGGCU---CCGGUGU--UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 150372 0.71 0.610789
Target:  5'- gAGGCGGAGGCUuGGGCUuaggcugagguugagGCGGAGG-Cu -3'
miRNA:   3'- -UCCGCUUCCGGcUCCGG---------------UGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 77024 0.7 0.626906
Target:  5'- aGGGUGGgguucAGGCCGcgcuGGGCCuCGGGGGAg -3'
miRNA:   3'- -UCCGCU-----UCCGGC----UCCGGuGUUUCCUg -5'
3602 3' -57.8 NC_001650.1 + 77943 0.7 0.616829
Target:  5'- aGGaGCGggGGCggcugCGAGGCaC-CGAGGGGCc -3'
miRNA:   3'- -UC-CGCuuCCG-----GCUCCG-GuGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 150552 0.71 0.610789
Target:  5'- gAGGCGGAGGCUuGGGCUuuggcucagguugagGCGGAGG-Cu -3'
miRNA:   3'- -UCCGCUUCCGGcUCCGG---------------UGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 66860 0.67 0.82672
Target:  5'- uGGCGG-GGCCGcGGGaggCGCcGGGGGCg -3'
miRNA:   3'- uCCGCUuCCGGC-UCCg--GUGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 30707 0.75 0.359427
Target:  5'- gGGGCGGgagagcgagAGG-CGGGGCCGCG-AGGACg -3'
miRNA:   3'- -UCCGCU---------UCCgGCUCCGGUGUuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 30992 0.67 0.804523
Target:  5'- gAGGCGcggaugcacaggagcAGGGCCu-GGCUgggGCGGGGGGCg -3'
miRNA:   3'- -UCCGC---------------UUCCGGcuCCGG---UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 69765 0.67 0.809742
Target:  5'- uAGGCucGGGCCucaGGGCgGCGuccAGGGCg -3'
miRNA:   3'- -UCCGcuUCCGGc--UCCGgUGUu--UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 71042 0.67 0.809742
Target:  5'- gAGcGCGGcGGGCCuGGGCCAgCAGaacAGGAUg -3'
miRNA:   3'- -UC-CGCU-UCCGGcUCCGGU-GUU---UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 133221 0.67 0.813189
Target:  5'- cGGCGuggGGGCUGggagcGGGCCgcccgagaaaaaacaACAGGGGGCc -3'
miRNA:   3'- uCCGCu--UCCGGC-----UCCGG---------------UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 130297 0.67 0.816611
Target:  5'- cGGGgGGAGGCCaacgccaggcuGGCCGCGgucaucGAGGAg -3'
miRNA:   3'- -UCCgCUUCCGGcu---------CCGGUGU------UUCCUg -5'
3602 3' -57.8 NC_001650.1 + 129068 0.67 0.817463
Target:  5'- -cGCGAccccgccAGGCUGGacguGGCCGCGAcGGGCu -3'
miRNA:   3'- ucCGCU-------UCCGGCU----CCGGUGUUuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 53266 0.67 0.809742
Target:  5'- gGGGUcacggGGAGGUCGAGGCCG---GGGuCg -3'
miRNA:   3'- -UCCG-----CUUCCGGCUCCGGUguuUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 27904 0.67 0.82672
Target:  5'- cGGgGguGGCgGGGGCCuACAAcgaccuGGACa -3'
miRNA:   3'- uCCgCuuCCGgCUCCGG-UGUUu-----CCUG- -5'
3602 3' -57.8 NC_001650.1 + 57807 0.67 0.82672
Target:  5'- uGG-GAGcGGCgGGGG-CGCGAAGGGCa -3'
miRNA:   3'- uCCgCUU-CCGgCUCCgGUGUUUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.