miRNA display CGI


Results 21 - 40 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 3' -57.8 NC_001650.1 + 58940 0.66 0.866041
Target:  5'- gGGGCGcggGAGGCCcggGAGGCgGCGgcGG-Cu -3'
miRNA:   3'- -UCCGC---UUCCGG---CUCCGgUGUuuCCuG- -5'
3602 3' -57.8 NC_001650.1 + 46018 0.66 0.861577
Target:  5'- cGGGCcaGGAucgcugauugacagcGGCCGcGGCCAaugaGAAGGGCc -3'
miRNA:   3'- -UCCG--CUU---------------CCGGCuCCGGUg---UUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 147161 0.66 0.861577
Target:  5'- aGGGCGAgaAucacugauugacagcGGCCGGGGCCAaugAGAGaGCa -3'
miRNA:   3'- -UCCGCU--U---------------CCGGCUCCGGUg--UUUCcUG- -5'
3602 3' -57.8 NC_001650.1 + 9048 0.66 0.858561
Target:  5'- gGGGCGAcaccgaggguuaGGGUagGGGGCgCGCGcgggAGGGGCa -3'
miRNA:   3'- -UCCGCU------------UCCGg-CUCCG-GUGU----UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 159025 0.66 0.858561
Target:  5'- cGGGC-AGGGCgGGGGaCCugAcccuccucAGGGGCa -3'
miRNA:   3'- -UCCGcUUCCGgCUCC-GGugU--------UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 175755 0.66 0.858561
Target:  5'- gGGGCGAcaccgaggguuaGGGUagGGGGCgCGCGcgggAGGGGCa -3'
miRNA:   3'- -UCCGCU------------UCCGg-CUCCG-GUGU----UUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 141837 0.66 0.858561
Target:  5'- -cGCGggGGCCcccGAGGCCG--AAGGuuuCa -3'
miRNA:   3'- ucCGCuuCCGG---CUCCGGUguUUCCu--G- -5'
3602 3' -57.8 NC_001650.1 + 125635 0.66 0.858561
Target:  5'- uGGCGAucgAGGC--GGGCC-CcGAGGGCg -3'
miRNA:   3'- uCCGCU---UCCGgcUCCGGuGuUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 111938 0.66 0.858561
Target:  5'- uGGUGugcGGCgCGGGGCgCAUccAGGACg -3'
miRNA:   3'- uCCGCuu-CCG-GCUCCG-GUGuuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 160207 0.66 0.850883
Target:  5'- gGGGuUGAGGaGCaaaGAGGCCACuAGGuGGCc -3'
miRNA:   3'- -UCC-GCUUC-CGg--CUCCGGUGuUUC-CUG- -5'
3602 3' -57.8 NC_001650.1 + 69261 0.66 0.850883
Target:  5'- gAGGUcucccuGGAGGCCGAGGgcuuCCACGAgaaccAGGcGCu -3'
miRNA:   3'- -UCCG------CUUCCGGCUCC----GGUGUU-----UCC-UG- -5'
3602 3' -57.8 NC_001650.1 + 70293 0.66 0.850883
Target:  5'- uGGCGAcGGgCGcAGGCCcaccaaGCAGAGG-Ca -3'
miRNA:   3'- uCCGCUuCCgGC-UCCGG------UGUUUCCuG- -5'
3602 3' -57.8 NC_001650.1 + 119228 0.66 0.850883
Target:  5'- cGGCGGgguGGGaCCugGAGGCCAac-AGGAUg -3'
miRNA:   3'- uCCGCU---UCC-GG--CUCCGGUguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 129560 0.66 0.850883
Target:  5'- cGGCGggGGCUGcAGuGCU----GGGGCa -3'
miRNA:   3'- uCCGCuuCCGGC-UC-CGGuguuUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 77870 0.66 0.850104
Target:  5'- aGGGUggaGAAGGCCGcgcuGGuCCugGAgcucacgGGGACg -3'
miRNA:   3'- -UCCG---CUUCCGGCu---CC-GGugUU-------UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 82765 0.66 0.843012
Target:  5'- cGGCG--GGCCGguacauguaguuGGGCagcaGCAGGGGGCc -3'
miRNA:   3'- uCCGCuuCCGGC------------UCCGg---UGUUUCCUG- -5'
3602 3' -57.8 NC_001650.1 + 164777 0.66 0.843012
Target:  5'- gAGGCGAggGGGCCc-GGCCGguuGGGAa -3'
miRNA:   3'- -UCCGCU--UCCGGcuCCGGUguuUCCUg -5'
3602 3' -57.8 NC_001650.1 + 60311 0.66 0.843012
Target:  5'- cGGGCGGcGGGUCG-GGCCAgacccuCGgcGGGCa -3'
miRNA:   3'- -UCCGCU-UCCGGCuCCGGU------GUuuCCUG- -5'
3602 3' -57.8 NC_001650.1 + 60126 0.66 0.843012
Target:  5'- -cGCGGAGGCCGcGuCCGCGGucuccAGGGCc -3'
miRNA:   3'- ucCGCUUCCGGCuCcGGUGUU-----UCCUG- -5'
3602 3' -57.8 NC_001650.1 + 143099 0.66 0.843012
Target:  5'- cGGCugcacGGGCCGGGGCgGCGgcGGcCa -3'
miRNA:   3'- uCCGcu---UCCGGCUCCGgUGUuuCCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.