miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 5' -66.6 NC_001650.1 + 131884 0.66 0.532239
Target:  5'- cGCGCCCCuCUUcccucccaaggaggaCGGGCGGGccagggcgggcuUC-CUGCUg -3'
miRNA:   3'- -CGCGGGG-GGA---------------GCCCGCCC------------AGaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 131872 0.73 0.203714
Target:  5'- cCGCCCCCCUCaGGGaGGGggcgCgcaggcaggcggCCGCCa -3'
miRNA:   3'- cGCGGGGGGAG-CCCgCCCa---Ga-----------GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 128473 0.66 0.528646
Target:  5'- uGgGCcccaCCCCCUCGGGCacGGG-C-CCGUa -3'
miRNA:   3'- -CgCG----GGGGGAGCCCG--CCCaGaGGCGg -5'
3602 5' -66.6 NC_001650.1 + 128408 0.68 0.417999
Target:  5'- uUGCUCUCC-CGGGCGa-UCUCCGCg -3'
miRNA:   3'- cGCGGGGGGaGCCCGCccAGAGGCGg -5'
3602 5' -66.6 NC_001650.1 + 128271 0.67 0.458978
Target:  5'- cGCGUagCCCCUCGGGUccgccaccGUCUCCcuGCCc -3'
miRNA:   3'- -CGCGg-GGGGAGCCCGcc------CAGAGG--CGG- -5'
3602 5' -66.6 NC_001650.1 + 127695 0.72 0.223798
Target:  5'- gGCGCCCCCCUCcccGGCcccaucGUCcCCGCCc -3'
miRNA:   3'- -CGCGGGGGGAGc--CCGcc----CAGaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 125411 0.72 0.23394
Target:  5'- gGgGCCCCgucgCCUCcgGGGCGGGaUCUucuggCCGCCu -3'
miRNA:   3'- -CgCGGGG----GGAG--CCCGCCC-AGA-----GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 125247 0.67 0.484567
Target:  5'- gGCGCCCCgCC-C-GGCGuc-CUCCGCCc -3'
miRNA:   3'- -CGCGGGG-GGaGcCCGCccaGAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 122436 0.66 0.493248
Target:  5'- uCGCCCCcggCCUCGGGCaccagCUCCcucGCCg -3'
miRNA:   3'- cGCGGGG---GGAGCCCGccca-GAGG---CGG- -5'
3602 5' -66.6 NC_001650.1 + 121507 0.7 0.316002
Target:  5'- aCGCCCUcuaUCUCGGGCGGGgacagguggCUCUuguuggagcagGCCg -3'
miRNA:   3'- cGCGGGG---GGAGCCCGCCCa--------GAGG-----------CGG- -5'
3602 5' -66.6 NC_001650.1 + 121279 0.69 0.336878
Target:  5'- gGCGCCCCCCgcgccgcggcgucccCGGGCaGGGcgUCgUCCaCCa -3'
miRNA:   3'- -CGCGGGGGGa--------------GCCCG-CCC--AG-AGGcGG- -5'
3602 5' -66.6 NC_001650.1 + 119942 0.67 0.450609
Target:  5'- gGUGCCCCggggcuCCUgCGGGUGgaaGGUCUuuGCg -3'
miRNA:   3'- -CGCGGGG------GGA-GCCCGC---CCAGAggCGg -5'
3602 5' -66.6 NC_001650.1 + 111490 0.68 0.386866
Target:  5'- -gGCCaCCCC-CGGGCuGGugaUCcCCGCCg -3'
miRNA:   3'- cgCGG-GGGGaGCCCGcCC---AGaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 110672 0.67 0.442324
Target:  5'- aCGCgCCCCCUCGGGCGa-----UGCCg -3'
miRNA:   3'- cGCG-GGGGGAGCCCGCccagagGCGG- -5'
3602 5' -66.6 NC_001650.1 + 109473 0.66 0.520594
Target:  5'- gGCGCCCCCCacuaucgccaccccgCGGGgaaGGGggguuaugauUCUCaGCCc -3'
miRNA:   3'- -CGCGGGGGGa--------------GCCCg--CCC----------AGAGgCGG- -5'
3602 5' -66.6 NC_001650.1 + 108766 0.68 0.386866
Target:  5'- cCGCuCCCCCUccucccccagcCGcGGCGGGaggCcCCGCCu -3'
miRNA:   3'- cGCG-GGGGGA-----------GC-CCGCCCa--GaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 107703 0.71 0.29053
Target:  5'- aGCGCCCUguaCUCuGGGaggGGGUC-CCGCUg -3'
miRNA:   3'- -CGCGGGGg--GAG-CCCg--CCCAGaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 107044 0.68 0.410073
Target:  5'- aGCGCCcaCCCCUgcaccguccaUGGaGCGGGUggCCGUCc -3'
miRNA:   3'- -CGCGG--GGGGA----------GCC-CGCCCAgaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 106900 0.67 0.47596
Target:  5'- aUGCCgCCCUCGGGgucgucguagaUGGG-CUCCcugaagGCCa -3'
miRNA:   3'- cGCGGgGGGAGCCC-----------GCCCaGAGG------CGG- -5'
3602 5' -66.6 NC_001650.1 + 102533 0.66 0.508167
Target:  5'- -gGUCCCCCgggaucugcUGGGCGGGUC-CCauaaaguacagagcGCCc -3'
miRNA:   3'- cgCGGGGGGa--------GCCCGCCCAGaGG--------------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.