miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3602 5' -66.6 NC_001650.1 + 79394 0.66 0.501122
Target:  5'- cGCGCCCCgucgcgcCCcCGGGCGGcGcC-CCGUg -3'
miRNA:   3'- -CGCGGGG-------GGaGCCCGCC-CaGaGGCGg -5'
3602 5' -66.6 NC_001650.1 + 68189 0.66 0.493248
Target:  5'- uGCGCCUCCUUCGGGaggcuGGaCgugCgCGCCg -3'
miRNA:   3'- -CGCGGGGGGAGCCCgc---CCaGa--G-GCGG- -5'
3602 5' -66.6 NC_001650.1 + 122436 0.66 0.493248
Target:  5'- uCGCCCCcggCCUCGGGCaccagCUCCcucGCCg -3'
miRNA:   3'- cGCGGGG---GGAGCCCGccca-GAGG---CGG- -5'
3602 5' -66.6 NC_001650.1 + 73165 0.66 0.493248
Target:  5'- aGgGCCuCCaCCUCGGucuuuGUGGGgcugccCUCCGUCa -3'
miRNA:   3'- -CgCGG-GG-GGAGCC-----CGCCCa-----GAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 89049 0.66 0.493248
Target:  5'- aGgGUCCUCUUCGagcccaugaGGCGGGUgaCCGCg -3'
miRNA:   3'- -CgCGGGGGGAGC---------CCGCCCAgaGGCGg -5'
3602 5' -66.6 NC_001650.1 + 125247 0.67 0.484567
Target:  5'- gGCGCCCCgCC-C-GGCGuc-CUCCGCCc -3'
miRNA:   3'- -CGCGGGG-GGaGcCCGCccaGAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 134349 0.67 0.484567
Target:  5'- uCGCCCCCUuggUCuGGuCGGGUCUCagGUUg -3'
miRNA:   3'- cGCGGGGGG---AGcCC-GCCCAGAGg-CGG- -5'
3602 5' -66.6 NC_001650.1 + 82002 0.67 0.484567
Target:  5'- cGUGUCCCUCUC-GGUGGGcCUgUGCg -3'
miRNA:   3'- -CGCGGGGGGAGcCCGCCCaGAgGCGg -5'
3602 5' -66.6 NC_001650.1 + 133921 0.67 0.483703
Target:  5'- gGCGCCCCCCgcucccaguuuUCagaggcagccgcaGGuGCGGGcCUCgcuCGCCc -3'
miRNA:   3'- -CGCGGGGGG-----------AG-------------CC-CGCCCaGAG---GCGG- -5'
3602 5' -66.6 NC_001650.1 + 106900 0.67 0.47596
Target:  5'- aUGCCgCCCUCGGGgucgucguagaUGGG-CUCCcugaagGCCa -3'
miRNA:   3'- cGCGGgGGGAGCCC-----------GCCCaGAGG------CGG- -5'
3602 5' -66.6 NC_001650.1 + 50882 0.67 0.467429
Target:  5'- aCGCCCCgCUUCGaGCGGGgggcUUCUGCa -3'
miRNA:   3'- cGCGGGG-GGAGCcCGCCCa---GAGGCGg -5'
3602 5' -66.6 NC_001650.1 + 27585 0.67 0.467429
Target:  5'- cUGCCCUCCUuccCGGGCGuG-C-CCGCCu -3'
miRNA:   3'- cGCGGGGGGA---GCCCGCcCaGaGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 65921 0.67 0.467429
Target:  5'- aGUGCCCCCUgugCgGGGCGGccUUUCUgGCCu -3'
miRNA:   3'- -CGCGGGGGGa--G-CCCGCCc-AGAGG-CGG- -5'
3602 5' -66.6 NC_001650.1 + 88484 0.67 0.467429
Target:  5'- -aGUUCUCCUcCGGGCGGGgcggggaCGCCg -3'
miRNA:   3'- cgCGGGGGGA-GCCCGCCCagag---GCGG- -5'
3602 5' -66.6 NC_001650.1 + 75623 0.67 0.467429
Target:  5'- cCGCCCCCCUgagcuaGauCGGGUCU-CGCCc -3'
miRNA:   3'- cGCGGGGGGAg-----CccGCCCAGAgGCGG- -5'
3602 5' -66.6 NC_001650.1 + 31746 0.67 0.458978
Target:  5'- uCGCCCCCCgc-GGCaGG--UCCGCCc -3'
miRNA:   3'- cGCGGGGGGagcCCGcCCagAGGCGG- -5'
3602 5' -66.6 NC_001650.1 + 128271 0.67 0.458978
Target:  5'- cGCGUagCCCCUCGGGUccgccaccGUCUCCcuGCCc -3'
miRNA:   3'- -CGCGg-GGGGAGCCCGcc------CAGAGG--CGG- -5'
3602 5' -66.6 NC_001650.1 + 43115 0.67 0.458978
Target:  5'- cGCGUCCCCUUUGGaCGguGGUCUuuagacuaucCCGCUg -3'
miRNA:   3'- -CGCGGGGGGAGCCcGC--CCAGA----------GGCGG- -5'
3602 5' -66.6 NC_001650.1 + 50640 0.67 0.450609
Target:  5'- uGCGCCCCCUcgagGGGCcGGUgC-CCGCg -3'
miRNA:   3'- -CGCGGGGGGag--CCCGcCCA-GaGGCGg -5'
3602 5' -66.6 NC_001650.1 + 119942 0.67 0.450609
Target:  5'- gGUGCCCCggggcuCCUgCGGGUGgaaGGUCUuuGCg -3'
miRNA:   3'- -CGCGGGG------GGA-GCCCGC---CCAGAggCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.