miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3604 3' -51.7 NC_001650.1 + 27184 0.68 0.972205
Target:  5'- aGGUGUacgagugcagggagUuUCCAgCGaCCGGCCACAGGgGg -3'
miRNA:   3'- -CCACA--------------AuAGGU-GC-GGCCGGUGUUUgU- -5'
3604 3' -51.7 NC_001650.1 + 122752 0.68 0.970186
Target:  5'- -----gGUCCugGCaGGCCugGGACAg -3'
miRNA:   3'- ccacaaUAGGugCGgCCGGugUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 83515 0.68 0.970186
Target:  5'- uGG-GUcAUCCugGgCGGCCGuCAGGCu -3'
miRNA:   3'- -CCaCAaUAGGugCgGCCGGU-GUUUGu -5'
3604 3' -51.7 NC_001650.1 + 49570 0.68 0.969889
Target:  5'- aGGUGUUggcucugGUCCugaugGCCGuGCCACAGAg- -3'
miRNA:   3'- -CCACAA-------UAGGug---CGGC-CGGUGUUUgu -5'
3604 3' -51.7 NC_001650.1 + 105179 0.69 0.963843
Target:  5'- aGUGUUggUCAUGgUGGCUACAAACu -3'
miRNA:   3'- cCACAAuaGGUGCgGCCGGUGUUUGu -5'
3604 3' -51.7 NC_001650.1 + 119824 0.69 0.960341
Target:  5'- gGGUGUggggcgcggcGUCCGCGCCcaGCCcGCAGACc -3'
miRNA:   3'- -CCACAa---------UAGGUGCGGc-CGG-UGUUUGu -5'
3604 3' -51.7 NC_001650.1 + 71182 0.69 0.960341
Target:  5'- uGGgGUUGUCCACcaGCCuGGaCACAAACu -3'
miRNA:   3'- -CCaCAAUAGGUG--CGG-CCgGUGUUUGu -5'
3604 3' -51.7 NC_001650.1 + 158063 0.69 0.952651
Target:  5'- uGGUGUgcaccUCCACcCUGGCCACcuGCc -3'
miRNA:   3'- -CCACAau---AGGUGcGGCCGGUGuuUGu -5'
3604 3' -51.7 NC_001650.1 + 71500 0.69 0.952242
Target:  5'- gGGUGUUGUucuuguuaaccacCCACGCCu-CCACGGGCu -3'
miRNA:   3'- -CCACAAUA-------------GGUGCGGccGGUGUUUGu -5'
3604 3' -51.7 NC_001650.1 + 70846 0.7 0.948454
Target:  5'- aGGUGUgcUCCACcagGUgGGCCuuGAACAu -3'
miRNA:   3'- -CCACAauAGGUG---CGgCCGGugUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 98341 0.7 0.939338
Target:  5'- aGGgaucuUCCGCaccGCCGGCCGCAcccAACAg -3'
miRNA:   3'- -CCacaauAGGUG---CGGCCGGUGU---UUGU- -5'
3604 3' -51.7 NC_001650.1 + 42741 0.7 0.939338
Target:  5'- gGGUGUgacgGUCCgggcGCGCCgguGGCCACcuGCc -3'
miRNA:   3'- -CCACAa---UAGG----UGCGG---CCGGUGuuUGu -5'
3604 3' -51.7 NC_001650.1 + 72612 0.7 0.934415
Target:  5'- cGGUGgacaugAUCCgcACGCUGGCCACc---- -3'
miRNA:   3'- -CCACaa----UAGG--UGCGGCCGGUGuuugu -5'
3604 3' -51.7 NC_001650.1 + 142688 0.71 0.912263
Target:  5'- -------gCCGCGCCGGCCgAUAAGCGg -3'
miRNA:   3'- ccacaauaGGUGCGGCCGG-UGUUUGU- -5'
3604 3' -51.7 NC_001650.1 + 76097 0.71 0.902305
Target:  5'- uGGUGcucAUCCugcugaucauaguguGCGCCGGCUACGuGCAc -3'
miRNA:   3'- -CCACaa-UAGG---------------UGCGGCCGGUGUuUGU- -5'
3604 3' -51.7 NC_001650.1 + 132042 0.71 0.893088
Target:  5'- gGGUGacGUCgGCgGCCGGCCACcgccccggccuGAACAg -3'
miRNA:   3'- -CCACaaUAGgUG-CGGCCGGUG-----------UUUGU- -5'
3604 3' -51.7 NC_001650.1 + 60741 0.71 0.893088
Target:  5'- ---cUUGUCCAgGUCGGCCAgGAGCu -3'
miRNA:   3'- ccacAAUAGGUgCGGCCGGUgUUUGu -5'
3604 3' -51.7 NC_001650.1 + 65193 0.72 0.879122
Target:  5'- --cGUccUCCAgGCCGGCCACGGcCAu -3'
miRNA:   3'- ccaCAauAGGUgCGGCCGGUGUUuGU- -5'
3604 3' -51.7 NC_001650.1 + 77871 0.72 0.856488
Target:  5'- gGGUGgagaaggCCGCGCUGGuCCugGAGCu -3'
miRNA:   3'- -CCACaaua---GGUGCGGCC-GGugUUUGu -5'
3604 3' -51.7 NC_001650.1 + 30572 0.73 0.848517
Target:  5'- cGUGcucUCCAUGCUGGCCGCGGuCAa -3'
miRNA:   3'- cCACaauAGGUGCGGCCGGUGUUuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.