miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3604 5' -58.9 NC_001650.1 + 4203 0.66 0.853483
Target:  5'- aCUCuGUCCGUGGGCGagcuccgcccCGgGCGCCAc-- -3'
miRNA:   3'- -GAG-CAGGCACUCGU----------GCaCGCGGUcca -5'
3604 5' -58.9 NC_001650.1 + 170910 0.66 0.853483
Target:  5'- aCUCuGUCCGUGGGCGagcuccgcccCGgGCGCCAc-- -3'
miRNA:   3'- -GAG-CAGGCACUCGU----------GCaCGCGGUcca -5'
3604 5' -58.9 NC_001650.1 + 71787 0.66 0.853483
Target:  5'- cCUCcaGUuuGagGAGCuCGUGCGCCgAGGg -3'
miRNA:   3'- -GAG--CAggCa-CUCGuGCACGCGG-UCCa -5'
3604 5' -58.9 NC_001650.1 + 73515 0.66 0.845813
Target:  5'- -aUGUCCGUGgugauggaGGcCACGUGCGCgggcacCAGGa -3'
miRNA:   3'- gaGCAGGCAC--------UC-GUGCACGCG------GUCCa -5'
3604 5' -58.9 NC_001650.1 + 27308 0.66 0.829935
Target:  5'- -aCGUCCcugacccUGAGCGCcUGgGCCAGGc -3'
miRNA:   3'- gaGCAGGc------ACUCGUGcACgCGGUCCa -5'
3604 5' -58.9 NC_001650.1 + 22581 0.66 0.829935
Target:  5'- -cCGUCCG-GGGCgGCG-GCGCCucGGUc -3'
miRNA:   3'- gaGCAGGCaCUCG-UGCaCGCGGu-CCA- -5'
3604 5' -58.9 NC_001650.1 + 132947 0.66 0.829935
Target:  5'- --aGUCCGgGGGguCGUGCaccgaGCCGGGg -3'
miRNA:   3'- gagCAGGCaCUCguGCACG-----CGGUCCa -5'
3604 5' -58.9 NC_001650.1 + 119056 0.66 0.82174
Target:  5'- -gUGUCUaUGAGCuuACGcaGCGCCAGGUc -3'
miRNA:   3'- gaGCAGGcACUCG--UGCa-CGCGGUCCA- -5'
3604 5' -58.9 NC_001650.1 + 129907 0.67 0.796216
Target:  5'- uUUGUCCGUGAGCuuGgacagcUGCcCCGGGa -3'
miRNA:   3'- gAGCAGGCACUCGugC------ACGcGGUCCa -5'
3604 5' -58.9 NC_001650.1 + 134988 0.67 0.796216
Target:  5'- cCUCGUCCGUGAGguC-UGCcuCUGGGg -3'
miRNA:   3'- -GAGCAGGCACUCguGcACGc-GGUCCa -5'
3604 5' -58.9 NC_001650.1 + 48073 0.68 0.732182
Target:  5'- -cUGaaCGUGGGCAUGUGCGUggaCAGGUg -3'
miRNA:   3'- gaGCagGCACUCGUGCACGCG---GUCCA- -5'
3604 5' -58.9 NC_001650.1 + 126453 0.68 0.732182
Target:  5'- aUCGgCCGUccGAGCGCGcGCGUgGGGg -3'
miRNA:   3'- gAGCaGGCA--CUCGUGCaCGCGgUCCa -5'
3604 5' -58.9 NC_001650.1 + 132748 0.68 0.732182
Target:  5'- gUCGcCCGggGGGCGCGcguUGC-CCAGGUa -3'
miRNA:   3'- gAGCaGGCa-CUCGUGC---ACGcGGUCCA- -5'
3604 5' -58.9 NC_001650.1 + 56574 0.68 0.722643
Target:  5'- uUCGcCCGUGGGCGa--GCGCCuGGa -3'
miRNA:   3'- gAGCaGGCACUCGUgcaCGCGGuCCa -5'
3604 5' -58.9 NC_001650.1 + 46455 0.7 0.634493
Target:  5'- --gGUCgCGcGGGgGCGUGUGCCAGGa -3'
miRNA:   3'- gagCAG-GCaCUCgUGCACGCGGUCCa -5'
3604 5' -58.9 NC_001650.1 + 71626 0.73 0.462002
Target:  5'- -aCG-CgGUGGGCGCGccggGCGCCAGGg -3'
miRNA:   3'- gaGCaGgCACUCGUGCa---CGCGGUCCa -5'
3604 5' -58.9 NC_001650.1 + 36824 0.73 0.453069
Target:  5'- -cCGUCCGUGAGCACccgccGCGUgGGGa -3'
miRNA:   3'- gaGCAGGCACUCGUGca---CGCGgUCCa -5'
3604 5' -58.9 NC_001650.1 + 110873 0.77 0.271102
Target:  5'- aUCGcCCGaggGGGCGCGUGCGCgGGGa -3'
miRNA:   3'- gAGCaGGCa--CUCGUGCACGCGgUCCa -5'
3604 5' -58.9 NC_001650.1 + 24816 1.06 0.002916
Target:  5'- cCUCGUCCGUGAGCACGUGCGCCAGGUc -3'
miRNA:   3'- -GAGCAGGCACUCGUGCACGCGGUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.