Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3604 | 5' | -58.9 | NC_001650.1 | + | 170910 | 0.66 | 0.853483 |
Target: 5'- aCUCuGUCCGUGGGCGagcuccgcccCGgGCGCCAc-- -3' miRNA: 3'- -GAG-CAGGCACUCGU----------GCaCGCGGUcca -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 134988 | 0.67 | 0.796216 |
Target: 5'- cCUCGUCCGUGAGguC-UGCcuCUGGGg -3' miRNA: 3'- -GAGCAGGCACUCguGcACGc-GGUCCa -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 132947 | 0.66 | 0.829935 |
Target: 5'- --aGUCCGgGGGguCGUGCaccgaGCCGGGg -3' miRNA: 3'- gagCAGGCaCUCguGCACG-----CGGUCCa -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 132748 | 0.68 | 0.732182 |
Target: 5'- gUCGcCCGggGGGCGCGcguUGC-CCAGGUa -3' miRNA: 3'- gAGCaGGCa-CUCGUGC---ACGcGGUCCA- -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 129907 | 0.67 | 0.796216 |
Target: 5'- uUUGUCCGUGAGCuuGgacagcUGCcCCGGGa -3' miRNA: 3'- gAGCAGGCACUCGugC------ACGcGGUCCa -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 126453 | 0.68 | 0.732182 |
Target: 5'- aUCGgCCGUccGAGCGCGcGCGUgGGGg -3' miRNA: 3'- gAGCaGGCA--CUCGUGCaCGCGgUCCa -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 119056 | 0.66 | 0.82174 |
Target: 5'- -gUGUCUaUGAGCuuACGcaGCGCCAGGUc -3' miRNA: 3'- gaGCAGGcACUCG--UGCa-CGCGGUCCA- -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 110873 | 0.77 | 0.271102 |
Target: 5'- aUCGcCCGaggGGGCGCGUGCGCgGGGa -3' miRNA: 3'- gAGCaGGCa--CUCGUGCACGCGgUCCa -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 73515 | 0.66 | 0.845813 |
Target: 5'- -aUGUCCGUGgugauggaGGcCACGUGCGCgggcacCAGGa -3' miRNA: 3'- gaGCAGGCAC--------UC-GUGCACGCG------GUCCa -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 71787 | 0.66 | 0.853483 |
Target: 5'- cCUCcaGUuuGagGAGCuCGUGCGCCgAGGg -3' miRNA: 3'- -GAG--CAggCa-CUCGuGCACGCGG-UCCa -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 71626 | 0.73 | 0.462002 |
Target: 5'- -aCG-CgGUGGGCGCGccggGCGCCAGGg -3' miRNA: 3'- gaGCaGgCACUCGUGCa---CGCGGUCCa -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 56574 | 0.68 | 0.722643 |
Target: 5'- uUCGcCCGUGGGCGa--GCGCCuGGa -3' miRNA: 3'- gAGCaGGCACUCGUgcaCGCGGuCCa -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 48073 | 0.68 | 0.732182 |
Target: 5'- -cUGaaCGUGGGCAUGUGCGUggaCAGGUg -3' miRNA: 3'- gaGCagGCACUCGUGCACGCG---GUCCA- -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 46455 | 0.7 | 0.634493 |
Target: 5'- --gGUCgCGcGGGgGCGUGUGCCAGGa -3' miRNA: 3'- gagCAG-GCaCUCgUGCACGCGGUCCa -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 36824 | 0.73 | 0.453069 |
Target: 5'- -cCGUCCGUGAGCACccgccGCGUgGGGa -3' miRNA: 3'- gaGCAGGCACUCGUGca---CGCGgUCCa -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 27308 | 0.66 | 0.829935 |
Target: 5'- -aCGUCCcugacccUGAGCGCcUGgGCCAGGc -3' miRNA: 3'- gaGCAGGc------ACUCGUGcACgCGGUCCa -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 24816 | 1.06 | 0.002916 |
Target: 5'- cCUCGUCCGUGAGCACGUGCGCCAGGUc -3' miRNA: 3'- -GAGCAGGCACUCGUGCACGCGGUCCA- -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 22581 | 0.66 | 0.829935 |
Target: 5'- -cCGUCCG-GGGCgGCG-GCGCCucGGUc -3' miRNA: 3'- gaGCAGGCaCUCG-UGCaCGCGGu-CCA- -5' |
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3604 | 5' | -58.9 | NC_001650.1 | + | 4203 | 0.66 | 0.853483 |
Target: 5'- aCUCuGUCCGUGGGCGagcuccgcccCGgGCGCCAc-- -3' miRNA: 3'- -GAG-CAGGCACUCGU----------GCaCGCGGUcca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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