miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3605 3' -63.1 NC_001650.1 + 6280 0.66 0.613514
Target:  5'- gGGGCCuUGGgcaauaaAGcCCCGgGCCCAaugGGGAc -3'
miRNA:   3'- gUCCGGuACC-------UC-GGGUgCGGGU---CCCU- -5'
3605 3' -63.1 NC_001650.1 + 172987 0.66 0.613514
Target:  5'- gGGGCCuUGGgcaauaaAGcCCCGgGCCCAaugGGGAc -3'
miRNA:   3'- gUCCGGuACC-------UC-GGGUgCGGGU---CCCU- -5'
3605 3' -63.1 NC_001650.1 + 58401 0.66 0.608657
Target:  5'- gGGGCCggGGAcgcguaGCCCuccgcgaugGCGCCCcucuccuccgggcucAGGGAg -3'
miRNA:   3'- gUCCGGuaCCU------CGGG---------UGCGGG---------------UCCCU- -5'
3605 3' -63.1 NC_001650.1 + 145496 0.66 0.604775
Target:  5'- aGGGCCG-GGGGCuCCugGUcagcuggagcuUCAGGGGc -3'
miRNA:   3'- gUCCGGUaCCUCG-GGugCG-----------GGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 24326 0.66 0.604775
Target:  5'- --aGCCugacGGGGaccuCCACGUCCAGGGAc -3'
miRNA:   3'- gucCGGua--CCUCg---GGUGCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 19040 0.66 0.604775
Target:  5'- cCAGGCCugaAUGGccgaGGCCgugCugGCCagCAGGGAa -3'
miRNA:   3'- -GUCCGG---UACC----UCGG---GugCGG--GUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 160862 0.66 0.604775
Target:  5'- cCAGGCCAugaUGGAGCCUuC-UCCAacGGGGu -3'
miRNA:   3'- -GUCCGGU---ACCUCGGGuGcGGGU--CCCU- -5'
3605 3' -63.1 NC_001650.1 + 25180 0.66 0.604775
Target:  5'- gGGGCCccgaaccccagGUGGGuGCCCugGgCCCAGcaGGGc -3'
miRNA:   3'- gUCCGG-----------UACCU-CGGGugC-GGGUC--CCU- -5'
3605 3' -63.1 NC_001650.1 + 75819 0.66 0.604775
Target:  5'- --aGCCAaaaaaguugcUGcAGuuaCCCACGCCCAGGGAg -3'
miRNA:   3'- gucCGGU----------ACcUC---GGGUGCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 66139 0.66 0.595082
Target:  5'- gUAGGCCAgaaaGGccGCCC-CGCaCAGGGGg -3'
miRNA:   3'- -GUCCGGUa---CCu-CGGGuGCGgGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 59735 0.66 0.595082
Target:  5'- aGGGgCGUcgaGGGGCCCgugGCcCCCGGGGGc -3'
miRNA:   3'- gUCCgGUA---CCUCGGG---UGcGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 114796 0.66 0.595082
Target:  5'- gAGGgCggGGAuccuGCaCACGCCCAGGGc -3'
miRNA:   3'- gUCCgGuaCCU----CGgGUGCGGGUCCCu -5'
3605 3' -63.1 NC_001650.1 + 138976 0.67 0.585413
Target:  5'- gGGGCCAUgcuggcagacaGGGGCCaugCugGCagaCAGGGGc -3'
miRNA:   3'- gUCCGGUA-----------CCUCGG---GugCGg--GUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 146040 0.67 0.585413
Target:  5'- gCAGGgCGUGGA-CCa--GCUCAGGGAc -3'
miRNA:   3'- -GUCCgGUACCUcGGgugCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 22171 0.67 0.585413
Target:  5'- aGGGgCGUGaAGCCCAgGUagCCGGGGGu -3'
miRNA:   3'- gUCCgGUACcUCGGGUgCG--GGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 171432 0.67 0.575775
Target:  5'- gGGGCUccGGAggcccuccguGCCCG-GCUCGGGGAa -3'
miRNA:   3'- gUCCGGuaCCU----------CGGGUgCGGGUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 23788 0.67 0.575775
Target:  5'- -uGGCUAUGGGGgCCAgGgCCAGGc- -3'
miRNA:   3'- guCCGGUACCUCgGGUgCgGGUCCcu -5'
3605 3' -63.1 NC_001650.1 + 100299 0.67 0.575775
Target:  5'- gAGGCCGUccgcaggugcggGGAGaggCGCGCCuCGGGGGu -3'
miRNA:   3'- gUCCGGUA------------CCUCgg-GUGCGG-GUCCCU- -5'
3605 3' -63.1 NC_001650.1 + 52795 0.67 0.575775
Target:  5'- -cGGCCcucGGGGCCCGgGCgCAGGa- -3'
miRNA:   3'- guCCGGua-CCUCGGGUgCGgGUCCcu -5'
3605 3' -63.1 NC_001650.1 + 127564 0.67 0.575775
Target:  5'- gGGGCgAggGGGGCgaC-CGCCCAGGGc -3'
miRNA:   3'- gUCCGgUa-CCUCGg-GuGCGGGUCCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.