miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3605 5' -50.9 NC_001650.1 + 143717 0.66 0.995789
Target:  5'- ---gCCUGGcCcuGAGGUCCCUGAa- -3'
miRNA:   3'- ggaaGGACCuGucUUUCAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 145955 0.68 0.985523
Target:  5'- cCCggCCcGGGCgAGGAAGUCCCggGAc- -3'
miRNA:   3'- -GGaaGGaCCUG-UCUUUCAGGGa-CUag -5'
3605 5' -50.9 NC_001650.1 + 151757 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 151799 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 151835 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 151871 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 151907 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 151943 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 152003 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 152039 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 152357 0.67 0.991307
Target:  5'- aCCUUUCguUGGuuucuUGGAAGG-CCCUGGUCu -3'
miRNA:   3'- -GGAAGG--ACCu----GUCUUUCaGGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 152621 0.67 0.990071
Target:  5'- cCCUUCCUGGGCgAGcAGG-CCCUu--- -3'
miRNA:   3'- -GGAAGGACCUG-UCuUUCaGGGAcuag -5'
3605 5' -50.9 NC_001650.1 + 154663 0.67 0.993782
Target:  5'- cCCUggugCaCUGGAacucucccuuauuuuCAGGAGGUCCCUGc-- -3'
miRNA:   3'- -GGAa---G-GACCU---------------GUCUUUCAGGGACuag -5'
3605 5' -50.9 NC_001650.1 + 156051 0.67 0.991307
Target:  5'- ----gCUGGACGcGGGGUCCCUGGa- -3'
miRNA:   3'- ggaagGACCUGUcUUUCAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 158851 0.71 0.926627
Target:  5'- cCCguagccgCCUGGAgGGAgggggggacAGGUCCCUGAc- -3'
miRNA:   3'- -GGaa-----GGACCUgUCU---------UUCAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 165655 0.66 0.996891
Target:  5'- gCCUUCCUccccuccccGGGCAGGguuacaaaaaaaaGAGgggCCCUGGc- -3'
miRNA:   3'- -GGAAGGA---------CCUGUCU-------------UUCa--GGGACUag -5'
3605 5' -50.9 NC_001650.1 + 179220 0.67 0.992419
Target:  5'- cCCUUCUcucuUGuACAuGggGGUCCCUGGg- -3'
miRNA:   3'- -GGAAGG----ACcUGU-CuuUCAGGGACUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.