miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3605 5' -50.9 NC_001650.1 + 132016 0.7 0.95486
Target:  5'- cCCggCCUGaACAGGAAGgCCCUGGg- -3'
miRNA:   3'- -GGaaGGACcUGUCUUUCaGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 123064 0.66 0.997412
Target:  5'- ---cCCUGGAUugGGAAAaGUUCCUGcgCa -3'
miRNA:   3'- ggaaGGACCUG--UCUUU-CAGGGACuaG- -5'
3605 5' -50.9 NC_001650.1 + 122716 0.7 0.958717
Target:  5'- gCCUcCCUGGccGCGGGAAGcugcugcuucUCCCUGAc- -3'
miRNA:   3'- -GGAaGGACC--UGUCUUUC----------AGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 121851 0.74 0.818301
Target:  5'- uCCUcggggggCCUGGGCAGGAAGaUCCUGAg- -3'
miRNA:   3'- -GGAa------GGACCUGUCUUUCaGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 121220 0.78 0.640261
Target:  5'- gCCUUCCUGGAgCGGugccucAAGUUCCUGGUg -3'
miRNA:   3'- -GGAAGGACCU-GUCu-----UUCAGGGACUAg -5'
3605 5' -50.9 NC_001650.1 + 117880 0.68 0.987188
Target:  5'- gCCUccaUCCUGGGCGGGGuGUgccccacgCCCggGGUCa -3'
miRNA:   3'- -GGA---AGGACCUGUCUUuCA--------GGGa-CUAG- -5'
3605 5' -50.9 NC_001650.1 + 115602 0.73 0.882447
Target:  5'- aCggCCUGcGACGGggGGaUCCUGGUCu -3'
miRNA:   3'- gGaaGGAC-CUGUCuuUCaGGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 113955 0.7 0.962342
Target:  5'- gCCaUCCUGGACAGGAGGgCCauuuUCa -3'
miRNA:   3'- -GGaAGGACCUGUCUUUCaGGgacuAG- -5'
3605 5' -50.9 NC_001650.1 + 101978 0.78 0.598478
Target:  5'- ---aCCUGGGCucGGGGUCCCUGAUCu -3'
miRNA:   3'- ggaaGGACCUGucUUUCAGGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 101896 0.67 0.9887
Target:  5'- gCCaUCCa-GACGGAGAGUCCCaUGGa- -3'
miRNA:   3'- -GGaAGGacCUGUCUUUCAGGG-ACUag -5'
3605 5' -50.9 NC_001650.1 + 101752 0.66 0.997412
Target:  5'- -gUUCCagGGGguGggGGUCCa-GAUCa -3'
miRNA:   3'- ggAAGGa-CCUguCuuUCAGGgaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 101693 0.67 0.993414
Target:  5'- cCCUUCCU--GCAGAaccccgagGAGUUCCUGGc- -3'
miRNA:   3'- -GGAAGGAccUGUCU--------UUCAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 100319 0.68 0.979307
Target:  5'- ---aCUUGGACAGGGAguagaccGUCCCaGAUCu -3'
miRNA:   3'- ggaaGGACCUGUCUUU-------CAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 94077 0.66 0.995789
Target:  5'- aCCUcCCUgugGGACAcGAAGagCCUGGUCc -3'
miRNA:   3'- -GGAaGGA---CCUGUcUUUCagGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 91375 0.69 0.968607
Target:  5'- aCCgugUCCUGGgaguacuucacguACAGccucuGUCCCUGGUUg -3'
miRNA:   3'- -GGa--AGGACC-------------UGUCuuu--CAGGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 89126 0.66 0.994302
Target:  5'- --gUCCUGGcCAGcAGGG-CCCUGAa- -3'
miRNA:   3'- ggaAGGACCuGUC-UUUCaGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 85898 0.68 0.985523
Target:  5'- cUCUUcaCCUGGACuGGGA-UCCCUGAa- -3'
miRNA:   3'- -GGAA--GGACCUGuCUUUcAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 85865 0.68 0.979535
Target:  5'- cUCUUCCucuuUGGGgAGAGgucccAGUCCCUG-UCa -3'
miRNA:   3'- -GGAAGG----ACCUgUCUU-----UCAGGGACuAG- -5'
3605 5' -50.9 NC_001650.1 + 77829 0.67 0.993414
Target:  5'- gCCUcCCUGGGCgAGggGGcaaCCUGGacUCg -3'
miRNA:   3'- -GGAaGGACCUG-UCuuUCag-GGACU--AG- -5'
3605 5' -50.9 NC_001650.1 + 76036 0.66 0.995091
Target:  5'- aCUcCCgggaaggGGACGGAcAGUCCCaUGGUg -3'
miRNA:   3'- gGAaGGa------CCUGUCUuUCAGGG-ACUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.