miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3605 5' -50.9 NC_001650.1 + 53002 0.69 0.964744
Target:  5'- uCCUgcgCCcGGGCcccgAGGgccgccgccgccgcGAGUCCCUGAUCu -3'
miRNA:   3'- -GGAa--GGaCCUG----UCU--------------UUCAGGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 179220 0.67 0.992419
Target:  5'- cCCUUCUcucuUGuACAuGggGGUCCCUGGg- -3'
miRNA:   3'- -GGAAGG----ACcUGU-CuuUCAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 140121 0.67 0.990071
Target:  5'- gCUUCCUGGACcccuGGAuuGcUUCCUGGa- -3'
miRNA:   3'- gGAAGGACCUG----UCUuuC-AGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 62611 0.69 0.970125
Target:  5'- gCCUgggCCUGGguuccuccccaaccaACAGAGuAGccCCCUGAUCu -3'
miRNA:   3'- -GGAa--GGACC---------------UGUCUU-UCa-GGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 60519 0.69 0.971876
Target:  5'- gCCggggUCCUGGGCAGAGgcggcGGUCUguUUGGUg -3'
miRNA:   3'- -GGa---AGGACCUGUCUU-----UCAGG--GACUAg -5'
3605 5' -50.9 NC_001650.1 + 152039 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 74397 0.7 0.950765
Target:  5'- gCCaUCCUGGACG--AGGUcacccccgacaCCCUGGUCu -3'
miRNA:   3'- -GGaAGGACCUGUcuUUCA-----------GGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 143717 0.66 0.995789
Target:  5'- ---gCCUGGcCcuGAGGUCCCUGAa- -3'
miRNA:   3'- ggaaGGACCuGucUUUCAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 76036 0.66 0.995091
Target:  5'- aCUcCCgggaaggGGACGGAcAGUCCCaUGGUg -3'
miRNA:   3'- gGAaGGa------CCUGUCUuUCAGGG-ACUAg -5'
3605 5' -50.9 NC_001650.1 + 154663 0.67 0.993782
Target:  5'- cCCUggugCaCUGGAacucucccuuauuuuCAGGAGGUCCCUGc-- -3'
miRNA:   3'- -GGAa---G-GACCU---------------GUCUUUCAGGGACuag -5'
3605 5' -50.9 NC_001650.1 + 152003 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 151943 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 151907 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 91375 0.69 0.968607
Target:  5'- aCCgugUCCUGGgaguacuucacguACAGccucuGUCCCUGGUUg -3'
miRNA:   3'- -GGa--AGGACC-------------UGUCuuu--CAGGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 101896 0.67 0.9887
Target:  5'- gCCaUCCa-GACGGAGAGUCCCaUGGa- -3'
miRNA:   3'- -GGaAGGacCUGUCUUUCAGGG-ACUag -5'
3605 5' -50.9 NC_001650.1 + 152621 0.67 0.990071
Target:  5'- cCCUUCCUGGGCgAGcAGG-CCCUu--- -3'
miRNA:   3'- -GGAAGGACCUG-UCuUUCaGGGAcuag -5'
3605 5' -50.9 NC_001650.1 + 152357 0.67 0.991307
Target:  5'- aCCUUUCguUGGuuucuUGGAAGG-CCCUGGUCu -3'
miRNA:   3'- -GGAAGG--ACCu----GUCUUUCaGGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 72545 0.67 0.992313
Target:  5'- cCCaUCCUGGACcaccuggAGAAcgGGaCCCUGAg- -3'
miRNA:   3'- -GGaAGGACCUG-------UCUU--UCaGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 77829 0.67 0.993414
Target:  5'- gCCUcCCUGGGCgAGggGGcaaCCUGGacUCg -3'
miRNA:   3'- -GGAaGGACCUG-UCuuUCag-GGACU--AG- -5'
3605 5' -50.9 NC_001650.1 + 101693 0.67 0.993414
Target:  5'- cCCUUCCU--GCAGAaccccgagGAGUUCCUGGc- -3'
miRNA:   3'- -GGAAGGAccUGUCU--------UUCAGGGACUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.