miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3605 5' -50.9 NC_001650.1 + 134215 0.68 0.987188
Target:  5'- gCCUcCCccgcGGGCAGAGAGccCCCUGGa- -3'
miRNA:   3'- -GGAaGGa---CCUGUCUUUCa-GGGACUag -5'
3605 5' -50.9 NC_001650.1 + 151943 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 152003 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 152039 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 100319 0.68 0.979307
Target:  5'- ---aCUUGGACAGGGAguagaccGUCCCaGAUCu -3'
miRNA:   3'- ggaaGGACCUGUCUUU-------CAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 72294 0.68 0.979535
Target:  5'- ---aCCUGGugGGGAGGUUCgUGAa- -3'
miRNA:   3'- ggaaGGACCugUCUUUCAGGgACUag -5'
3605 5' -50.9 NC_001650.1 + 50549 0.68 0.981706
Target:  5'- gCCUUCCUGG-CGGuGGAGUgCCCgcgcaacccGGUCa -3'
miRNA:   3'- -GGAAGGACCuGUC-UUUCA-GGGa--------CUAG- -5'
3605 5' -50.9 NC_001650.1 + 85898 0.68 0.985523
Target:  5'- cUCUUcaCCUGGACuGGGA-UCCCUGAa- -3'
miRNA:   3'- -GGAA--GGACCUGuCUUUcAGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 145955 0.68 0.985523
Target:  5'- cCCggCCcGGGCgAGGAAGUCCCggGAc- -3'
miRNA:   3'- -GGaaGGaCCUG-UCUUUCAGGGa-CUag -5'
3605 5' -50.9 NC_001650.1 + 151907 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 151871 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 151835 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 59262 0.71 0.941851
Target:  5'- aCUgcgUCCUGGGCAGGAAGgugCCCcccgaGAUa -3'
miRNA:   3'- -GGa--AGGACCUGUCUUUCa--GGGa----CUAg -5'
3605 5' -50.9 NC_001650.1 + 74397 0.7 0.950765
Target:  5'- gCCaUCCUGGACG--AGGUcacccccgacaCCCUGGUCu -3'
miRNA:   3'- -GGaAGGACCUGUcuUUCA-----------GGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 122716 0.7 0.958717
Target:  5'- gCCUcCCUGGccGCGGGAAGcugcugcuucUCCCUGAc- -3'
miRNA:   3'- -GGAaGGACC--UGUCUUUC----------AGGGACUag -5'
3605 5' -50.9 NC_001650.1 + 24115 0.7 0.962342
Target:  5'- ---cCCUGGACGuGGAGGUCCCc-GUCa -3'
miRNA:   3'- ggaaGGACCUGU-CUUUCAGGGacUAG- -5'
3605 5' -50.9 NC_001650.1 + 91375 0.69 0.968607
Target:  5'- aCCgugUCCUGGgaguacuucacguACAGccucuGUCCCUGGUUg -3'
miRNA:   3'- -GGa--AGGACC-------------UGUCuuu--CAGGGACUAG- -5'
3605 5' -50.9 NC_001650.1 + 60519 0.69 0.971876
Target:  5'- gCCggggUCCUGGGCAGAGgcggcGGUCUguUUGGUg -3'
miRNA:   3'- -GGa---AGGACCUGUCUU-----UCAGG--GACUAg -5'
3605 5' -50.9 NC_001650.1 + 151757 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5'
3605 5' -50.9 NC_001650.1 + 151799 0.69 0.977178
Target:  5'- uCCUggUCCUGGAUcuGGuccuGGUCCUgGAUCu -3'
miRNA:   3'- -GGA--AGGACCUG--UCuu--UCAGGGaCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.