miRNA display CGI


Results 21 - 40 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3606 3' -63.3 NC_001650.1 + 171715 0.66 0.638195
Target:  5'- gGGUGGGCUccGGgGGGCCUccgugugucugauagGCggacgggGGUCc -3'
miRNA:   3'- -CCAUCCGGuaCCgCCCGGG---------------CGa------CCGG- -5'
3606 3' -63.3 NC_001650.1 + 169801 0.66 0.634346
Target:  5'- gGGUGGGCUAgggGGUGGGCauaUggggugagguagGCUGuuGCCa -3'
miRNA:   3'- -CCAUCCGGUa--CCGCCCGg--G------------CGAC--CGG- -5'
3606 3' -63.3 NC_001650.1 + 3094 0.66 0.634346
Target:  5'- gGGUGGGCUAgggGGUGGGCauaUggggugagguagGCUGuuGCCa -3'
miRNA:   3'- -CCAUCCGGUa--CCGCCCGg--G------------CGAC--CGG- -5'
3606 3' -63.3 NC_001650.1 + 157590 0.66 0.634346
Target:  5'- --aAGGCC---GCGGGCCUcaacgGCUGcGCCu -3'
miRNA:   3'- ccaUCCGGuacCGCCCGGG-----CGAC-CGG- -5'
3606 3' -63.3 NC_001650.1 + 130012 0.66 0.634346
Target:  5'- cGGgacgAGGCC---GCGGGCCUcaagGGCCa -3'
miRNA:   3'- -CCa---UCCGGuacCGCCCGGGcga-CCGG- -5'
3606 3' -63.3 NC_001650.1 + 50744 0.66 0.634346
Target:  5'- --aGGGCCGcGGUGGGCgCCGCca-CCa -3'
miRNA:   3'- ccaUCCGGUaCCGCCCG-GGCGaccGG- -5'
3606 3' -63.3 NC_001650.1 + 148023 0.66 0.634346
Target:  5'- aGUGGGCUAgggGGCccGGGCgUCGCggcaGGCUc -3'
miRNA:   3'- cCAUCCGGUa--CCG--CCCG-GGCGa---CCGG- -5'
3606 3' -63.3 NC_001650.1 + 49177 0.66 0.634346
Target:  5'- uGGUguccgaGGGCCGcgcgcUGGCcgaGGGCgaGCUGcGCCu -3'
miRNA:   3'- -CCA------UCCGGU-----ACCG---CCCGggCGAC-CGG- -5'
3606 3' -63.3 NC_001650.1 + 124211 0.66 0.624722
Target:  5'- aGUccGCCAaagaGGUGGGCCagaaGCUGGUg -3'
miRNA:   3'- cCAucCGGUa---CCGCCCGGg---CGACCGg -5'
3606 3' -63.3 NC_001650.1 + 131842 0.66 0.624722
Target:  5'- aGgcGGCCGccagcuCGGGCCgGgUGGCCa -3'
miRNA:   3'- cCauCCGGUacc---GCCCGGgCgACCGG- -5'
3606 3' -63.3 NC_001650.1 + 3101 0.66 0.624722
Target:  5'- aGGgAGGCCAuauUGGauucuGGCCC-CUGGCa -3'
miRNA:   3'- -CCaUCCGGU---ACCgc---CCGGGcGACCGg -5'
3606 3' -63.3 NC_001650.1 + 87580 0.66 0.624722
Target:  5'- aGG-AGGCCGcGaUGGGCaCCG-UGGCCg -3'
miRNA:   3'- -CCaUCCGGUaCcGCCCG-GGCgACCGG- -5'
3606 3' -63.3 NC_001650.1 + 73420 0.66 0.624722
Target:  5'- gGGgcGGCCcagGGCcagcacaacGGGCCCGac-GCCa -3'
miRNA:   3'- -CCauCCGGua-CCG---------CCCGGGCgacCGG- -5'
3606 3' -63.3 NC_001650.1 + 32166 0.66 0.624722
Target:  5'- --gGGGUCGggGGCGGGCCuCGCgucGUCc -3'
miRNA:   3'- ccaUCCGGUa-CCGCCCGG-GCGac-CGG- -5'
3606 3' -63.3 NC_001650.1 + 169808 0.66 0.624722
Target:  5'- aGGgAGGCCAuauUGGauucuGGCCC-CUGGCa -3'
miRNA:   3'- -CCaUCCGGU---ACCgc---CCGGGcGACCGg -5'
3606 3' -63.3 NC_001650.1 + 128474 0.66 0.622798
Target:  5'- -aUGGGCCccacccccucgGGCacGGGCCCGUaGGCg -3'
miRNA:   3'- ccAUCCGGua---------CCG--CCCGGGCGaCCGg -5'
3606 3' -63.3 NC_001650.1 + 33805 0.66 0.617988
Target:  5'- --cAGGCCuGUGGUGGGCUucaaguuuaucaaUgggagcgaacuguuuGCUGGCCa -3'
miRNA:   3'- ccaUCCGG-UACCGCCCGG-------------G---------------CGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 65271 0.66 0.615103
Target:  5'- aGGU-GGCCGUcau-GGCCCGCaggagGGCCa -3'
miRNA:   3'- -CCAuCCGGUAccgcCCGGGCGa----CCGG- -5'
3606 3' -63.3 NC_001650.1 + 118952 0.66 0.615103
Target:  5'- cGUAGGCCcUGGUgucuacGGGCgCGCgccuGCCc -3'
miRNA:   3'- cCAUCCGGuACCG------CCCGgGCGac--CGG- -5'
3606 3' -63.3 NC_001650.1 + 58372 0.66 0.615103
Target:  5'- aGGUgaaaugGGGCUcgGGCaGGCUCuCgggGGCCg -3'
miRNA:   3'- -CCA------UCCGGuaCCGcCCGGGcGa--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.