Results 21 - 40 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 46509 | 0.67 | 0.748793 |
Target: 5'- --cGGCGUCGGGGCCGgcggcgaccgggcgcCCUGGCUauuaGAg -3' miRNA: 3'- aucUUGUAGCUCCGGC---------------GGACCGGg---CU- -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 173395 | 0.67 | 0.745025 |
Target: 5'- uUAGGGCAUUG-GGCaauaaaGCCcaUGGCCCa- -3' miRNA: 3'- -AUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 39848 | 0.67 | 0.745025 |
Target: 5'- cAGAGCua-----CCGCCUGGCCCGGg -3' miRNA: 3'- aUCUUGuagcuccGGCGGACCGGGCU- -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 7278 | 0.67 | 0.745025 |
Target: 5'- uUAGGGCAUUG-GGCaauaaaGCCcaUGGCCCa- -3' miRNA: 3'- -AUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 174097 | 0.67 | 0.745025 |
Target: 5'- uUAGGGCAUUG-GGCaauaaaGCCcaUGGCCCa- -3' miRNA: 3'- -AUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 7390 | 0.67 | 0.745025 |
Target: 5'- uUAGGGCAUUG-GGCaauaaaGCCcaUGGCCCa- -3' miRNA: 3'- -AUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 6688 | 0.67 | 0.745025 |
Target: 5'- uUAGGGCAUUG-GGCaauaaaGCCcaUGGCCCa- -3' miRNA: 3'- -AUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 173985 | 0.67 | 0.745025 |
Target: 5'- uUAGGGCAUUG-GGCaauaaaGCCcaUGGCCCa- -3' miRNA: 3'- -AUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 108879 | 0.67 | 0.745025 |
Target: 5'- gAGGGCAUgGAGGacgcgcgccucaCCGCCUGcGUCCa- -3' miRNA: 3'- aUCUUGUAgCUCC------------GGCGGAC-CGGGcu -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 27445 | 0.67 | 0.735538 |
Target: 5'- -cGGGCAacUCGGuGCUGuaCCUGGCCCGGg -3' miRNA: 3'- auCUUGU--AGCUcCGGC--GGACCGGGCU- -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 118292 | 0.67 | 0.735538 |
Target: 5'- cAGAGCuccaUGuAGGCCGCCacgcugacgGGCCUGAg -3' miRNA: 3'- aUCUUGua--GC-UCCGGCGGa--------CCGGGCU- -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 35525 | 0.67 | 0.735538 |
Target: 5'- gUGGAAgGUCaGGGCCacaggcgugugGcCCUGGCCCGc -3' miRNA: 3'- -AUCUUgUAGcUCCGG-----------C-GGACCGGGCu -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 77943 | 0.67 | 0.725967 |
Target: 5'- aGGAGCGggGGcGGCUGCgaGGCaCCGAg -3' miRNA: 3'- aUCUUGUagCU-CCGGCGgaCCG-GGCU- -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 125043 | 0.67 | 0.725967 |
Target: 5'- gAGGACGccgggCGGGG-CGCCUcGCCCGGc -3' miRNA: 3'- aUCUUGUa----GCUCCgGCGGAcCGGGCU- -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 132837 | 0.67 | 0.725967 |
Target: 5'- gGGAugGggGAGGCCGCCUgcagguugggGGCCa-- -3' miRNA: 3'- aUCUugUagCUCCGGCGGA----------CCGGgcu -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 145988 | 0.67 | 0.716318 |
Target: 5'- gAGAGCAg-GAGGCucguccucacCGCCUGGaaCCCGGc -3' miRNA: 3'- aUCUUGUagCUCCG----------GCGGACC--GGGCU- -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 164851 | 0.67 | 0.716318 |
Target: 5'- gGGAGCc-CGGGuGCCGCgC-GGCCCGGg -3' miRNA: 3'- aUCUUGuaGCUC-CGGCG-GaCCGGGCU- -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 6301 | 0.67 | 0.716318 |
Target: 5'- gGGAcucgaugcauauGCAUCGGGGCCuugggcaauaaaGCCccgGGCCCa- -3' miRNA: 3'- aUCU------------UGUAGCUCCGG------------CGGa--CCGGGcu -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 173008 | 0.67 | 0.716318 |
Target: 5'- gGGAcucgaugcauauGCAUCGGGGCCuugggcaauaaaGCCccgGGCCCa- -3' miRNA: 3'- aUCU------------UGUAGCUCCGG------------CGGa--CCGGGcu -5' |
|||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 143169 | 0.68 | 0.706602 |
Target: 5'- gAGAGCAUgcauGGCC-CCUGGCaCCGGu -3' miRNA: 3'- aUCUUGUAgcu-CCGGcGGACCG-GGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home