Results 21 - 40 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 87900 | 0.68 | 0.999874 |
Target: 5'- ---gAGGAGGgagacgGG-CGAGGGCGGCc -3' miRNA: 3'- gaaaUUCUCCaa----UCaGUUCCUGUCGa -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 91842 | 0.68 | 0.999874 |
Target: 5'- ---cAAGAGGcUGGgCGAGGuCAGCa -3' miRNA: 3'- gaaaUUCUCCaAUCaGUUCCuGUCGa -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 118010 | 0.68 | 0.999836 |
Target: 5'- ---cGAGGGGgagGGUgCcGGGGCAGCg -3' miRNA: 3'- gaaaUUCUCCaa-UCA-GuUCCUGUCGa -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 80158 | 0.68 | 0.999836 |
Target: 5'- --gUGGGAGGg----CGAGGGCGGCc -3' miRNA: 3'- gaaAUUCUCCaaucaGUUCCUGUCGa -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 77921 | 0.68 | 0.999809 |
Target: 5'- ---aGGGAGGUggucuucaaacaggAGgagCGGGGGCGGCUg -3' miRNA: 3'- gaaaUUCUCCAa-------------UCa--GUUCCUGUCGA- -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 130400 | 0.68 | 0.999789 |
Target: 5'- gCUUccuGGAGGgcaucGUCAGGGACAaGCa -3' miRNA: 3'- -GAAau-UCUCCaau--CAGUUCCUGU-CGa -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 123524 | 0.68 | 0.999789 |
Target: 5'- ---gGAGGGGUgccccUCAAGGACAGg- -3' miRNA: 3'- gaaaUUCUCCAauc--AGUUCCUGUCga -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 142181 | 0.69 | 0.999655 |
Target: 5'- ----uAGAGGUaaaagauagGGUCGAGGGCAGaCg -3' miRNA: 3'- gaaauUCUCCAa--------UCAGUUCCUGUC-Ga -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 156191 | 0.69 | 0.999318 |
Target: 5'- ---cAGGGGGgcucggUGGuguUCAGGGACAGCc -3' miRNA: 3'- gaaaUUCUCCa-----AUC---AGUUCCUGUCGa -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 126482 | 0.7 | 0.998451 |
Target: 5'- ----cGGGGGUccGUCGAGGACGGg- -3' miRNA: 3'- gaaauUCUCCAauCAGUUCCUGUCga -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 111980 | 0.71 | 0.997305 |
Target: 5'- -----uGAGGgaGGUUAAGGugGGCa -3' miRNA: 3'- gaaauuCUCCaaUCAGUUCCugUCGa -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 49473 | 0.71 | 0.996793 |
Target: 5'- --aUAGuGAGGUUGugcGUCAAGGAguGCa -3' miRNA: 3'- gaaAUU-CUCCAAU---CAGUUCCUguCGa -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 80922 | 0.72 | 0.994757 |
Target: 5'- ---cGAGuGGau-GUCAGGGACGGCa -3' miRNA: 3'- gaaaUUCuCCaauCAGUUCCUGUCGa -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 130709 | 0.72 | 0.992894 |
Target: 5'- ---aGGGAGGcgGGgcaCAGGGGCAGCa -3' miRNA: 3'- gaaaUUCUCCaaUCa--GUUCCUGUCGa -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 129221 | 0.73 | 0.989148 |
Target: 5'- ----uGGAGGggGGUCGAGGGgaAGCUg -3' miRNA: 3'- gaaauUCUCCaaUCAGUUCCUg-UCGA- -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 15305 | 0.73 | 0.984016 |
Target: 5'- ---aGAGAGG-UGGagAGGGGCGGCUg -3' miRNA: 3'- gaaaUUCUCCaAUCagUUCCUGUCGA- -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 182012 | 0.73 | 0.984016 |
Target: 5'- ---aGAGAGG-UGGagAGGGGCGGCUg -3' miRNA: 3'- gaaaUUCUCCaAUCagUUCCUGUCGA- -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 110967 | 0.74 | 0.979691 |
Target: 5'- --aUAGGAGGggAGaCGAGGACAGg- -3' miRNA: 3'- gaaAUUCUCCaaUCaGUUCCUGUCga -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 98846 | 0.78 | 0.875432 |
Target: 5'- ---cAGGAGGUcAG-CAGGGACAGCUc -3' miRNA: 3'- gaaaUUCUCCAaUCaGUUCCUGUCGA- -5' |
|||||||
3607 | 3' | -45.9 | NC_001650.1 | + | 25887 | 1.08 | 0.033398 |
Target: 5'- uCUUUAAGAGGUUAGUCAAGGACAGCUu -3' miRNA: 3'- -GAAAUUCUCCAAUCAGUUCCUGUCGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home