Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3607 | 5' | -57.2 | NC_001650.1 | + | 122364 | 0.68 | 0.805274 |
Target: 5'- aGGGCGCCg---CCGUCUCCcCCUCc -3' miRNA: 3'- gCUCGUGGgacaGGUAGAGGaGGAGc -5' |
|||||||
3607 | 5' | -57.2 | NC_001650.1 | + | 50307 | 0.68 | 0.803542 |
Target: 5'- gCGAGCGCCCaaagcgcgccucGUCCcUCccggccccggCCUCCUCGa -3' miRNA: 3'- -GCUCGUGGGa-----------CAGGuAGa---------GGAGGAGC- -5' |
|||||||
3607 | 5' | -57.2 | NC_001650.1 | + | 87691 | 0.69 | 0.769589 |
Target: 5'- uGGcCGCCCUcGcCCGUCUCcCUCCUCu -3' miRNA: 3'- gCUcGUGGGA-CaGGUAGAG-GAGGAGc -5' |
|||||||
3607 | 5' | -57.2 | NC_001650.1 | + | 134634 | 0.69 | 0.741573 |
Target: 5'- aCGGGCuCCUcGUCCAgggCCUCCUCc -3' miRNA: 3'- -GCUCGuGGGaCAGGUagaGGAGGAGc -5' |
|||||||
3607 | 5' | -57.2 | NC_001650.1 | + | 121606 | 0.7 | 0.712739 |
Target: 5'- -cAGCGCCCUcggguggcccGUCCA-CUCCUaCCUCa -3' miRNA: 3'- gcUCGUGGGA----------CAGGUaGAGGA-GGAGc -5' |
|||||||
3607 | 5' | -57.2 | NC_001650.1 | + | 129669 | 0.7 | 0.702986 |
Target: 5'- aGGGCuccACCCUGUCC-UCgacCCUCC-CGg -3' miRNA: 3'- gCUCG---UGGGACAGGuAGa--GGAGGaGC- -5' |
|||||||
3607 | 5' | -57.2 | NC_001650.1 | + | 91709 | 0.75 | 0.442072 |
Target: 5'- uGAGCAUCaUGUCCcUCUCCUUCUCc -3' miRNA: 3'- gCUCGUGGgACAGGuAGAGGAGGAGc -5' |
|||||||
3607 | 5' | -57.2 | NC_001650.1 | + | 146347 | 0.78 | 0.300971 |
Target: 5'- uGGGCACCCUGUCCGUCUUCggggaCCa-- -3' miRNA: 3'- gCUCGUGGGACAGGUAGAGGa----GGagc -5' |
|||||||
3607 | 5' | -57.2 | NC_001650.1 | + | 25846 | 1.09 | 0.002935 |
Target: 5'- uCGAGCACCCUGUCCAUCUCCUCCUCGa -3' miRNA: 3'- -GCUCGUGGGACAGGUAGAGGAGGAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home