miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3608 3' -60.2 NC_001650.1 + 76849 0.67 0.724401
Target:  5'- gGCCGCCGCgCAGCUGG-CGaucUGCAGc -3'
miRNA:   3'- -UGGUGGUG-GUCGACCgGCgccAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 22885 0.67 0.724401
Target:  5'- gGCCGCCaggauggagGCCAGCcgccGGCCGCugucGUGCGa -3'
miRNA:   3'- -UGGUGG---------UGGUCGa---CCGGCGc---CAUGUc -5'
3608 3' -60.2 NC_001650.1 + 37007 0.67 0.724401
Target:  5'- gGCCAUCaggcGCgAGCUGGCCaCGGUcuCGGa -3'
miRNA:   3'- -UGGUGG----UGgUCGACCGGcGCCAu-GUC- -5'
3608 3' -60.2 NC_001650.1 + 93326 0.67 0.724401
Target:  5'- aGCCGCCA-CGGCcgUGGCCcCGGUgaugagGCAGu -3'
miRNA:   3'- -UGGUGGUgGUCG--ACCGGcGCCA------UGUC- -5'
3608 3' -60.2 NC_001650.1 + 57520 0.67 0.714809
Target:  5'- --uGCCACCGGCgcuacGGCCGCuaauguGGaGCAGa -3'
miRNA:   3'- uggUGGUGGUCGa----CCGGCG------CCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 499 0.67 0.70515
Target:  5'- uAUCGCCucgGCCGGCaggGGgCGCuGUGCAGg -3'
miRNA:   3'- -UGGUGG---UGGUCGa--CCgGCGcCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 142619 0.67 0.70515
Target:  5'- cCCGCCgucaagcagcagGCCGGCggagggGGCUGCGGcugcUGCGGc -3'
miRNA:   3'- uGGUGG------------UGGUCGa-----CCGGCGCC----AUGUC- -5'
3608 3' -60.2 NC_001650.1 + 167206 0.67 0.70515
Target:  5'- uAUCGCCucgGCCGGCaggGGgCGCuGUGCAGg -3'
miRNA:   3'- -UGGUGG---UGGUCGa--CCgGCGcCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 122104 0.67 0.696408
Target:  5'- cACCACCuCCAGCgcguaguccgcgucGCCGgGGUugAGc -3'
miRNA:   3'- -UGGUGGuGGUCGac------------CGGCgCCAugUC- -5'
3608 3' -60.2 NC_001650.1 + 78669 0.67 0.695434
Target:  5'- gACCGCCACgGcCUGGCggaggaCGCGGgcGCAGa -3'
miRNA:   3'- -UGGUGGUGgUcGACCG------GCGCCa-UGUC- -5'
3608 3' -60.2 NC_001650.1 + 132236 0.67 0.685668
Target:  5'- gGCCGCgGCCAGC-GcGUagaGCaGGUGCAGg -3'
miRNA:   3'- -UGGUGgUGGUCGaC-CGg--CG-CCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 136287 0.67 0.685668
Target:  5'- cGCCcCCGCCuucauGGC-GGCCGCGGgGCuGg -3'
miRNA:   3'- -UGGuGGUGG-----UCGaCCGGCGCCaUGuC- -5'
3608 3' -60.2 NC_001650.1 + 23575 0.68 0.665035
Target:  5'- gACCACCACCauagaguAGUcGGCCaCGG-GCAGg -3'
miRNA:   3'- -UGGUGGUGG-------UCGaCCGGcGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 15574 0.68 0.660103
Target:  5'- gGCCGCUcgGCUGGUuggugggugggugggUGGuuGUGGUGCAGa -3'
miRNA:   3'- -UGGUGG--UGGUCG---------------ACCggCGCCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 182281 0.68 0.660103
Target:  5'- gGCCGCUcgGCUGGUuggugggugggugggUGGuuGUGGUGCAGa -3'
miRNA:   3'- -UGGUGG--UGGUCG---------------ACCggCGCCAUGUC- -5'
3608 3' -60.2 NC_001650.1 + 157605 0.68 0.656154
Target:  5'- uACCAguuCCugCAGaaGGCCGCGGgccucaACGGc -3'
miRNA:   3'- -UGGU---GGugGUCgaCCGGCGCCa-----UGUC- -5'
3608 3' -60.2 NC_001650.1 + 129071 0.68 0.656154
Target:  5'- gACC-CCGCCAgGCUGGaCGUGGccgcgACGGg -3'
miRNA:   3'- -UGGuGGUGGU-CGACCgGCGCCa----UGUC- -5'
3608 3' -60.2 NC_001650.1 + 60645 0.68 0.656154
Target:  5'- gGCCACCGucuCCAGCUGcCUGgGGUugGa -3'
miRNA:   3'- -UGGUGGU---GGUCGACcGGCgCCAugUc -5'
3608 3' -60.2 NC_001650.1 + 131542 0.68 0.646269
Target:  5'- gUgGCCGCCcgggGGCUGGaCGCGGgGCGGa -3'
miRNA:   3'- uGgUGGUGG----UCGACCgGCGCCaUGUC- -5'
3608 3' -60.2 NC_001650.1 + 43963 0.68 0.646269
Target:  5'- aGCCGcuaucuCCACCuGCUGGUgaauaCGUGGUugGGa -3'
miRNA:   3'- -UGGU------GGUGGuCGACCG-----GCGCCAugUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.