miRNA display CGI


Results 21 - 40 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3608 5' -58.4 NC_001650.1 + 65814 0.67 0.788353
Target:  5'- -cCCGUCGCC-CCAUCCuCCGCc---- -3'
miRNA:   3'- gaGGCAGUGGuGGUGGG-GGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 115663 0.67 0.788353
Target:  5'- -gCCGggagaGCCACCAgUCgCCGCUGUGa -3'
miRNA:   3'- gaGGCag---UGGUGGUgGG-GGCGAUACa -5'
3608 5' -58.4 NC_001650.1 + 158054 0.67 0.779408
Target:  5'- cCUCCacccUgGCCACCugCCCCGUcagUAUGc -3'
miRNA:   3'- -GAGGc---AgUGGUGGugGGGGCG---AUACa -5'
3608 5' -58.4 NC_001650.1 + 159818 0.67 0.779408
Target:  5'- gUCCcccuugC-CCACCGCCCCCGCcgccAUGUu -3'
miRNA:   3'- gAGGca----GuGGUGGUGGGGGCGa---UACA- -5'
3608 5' -58.4 NC_001650.1 + 120612 0.68 0.761154
Target:  5'- -cCCGagggCACCcCCGCCCCCGCc---- -3'
miRNA:   3'- gaGGCa---GUGGuGGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 98637 0.68 0.761154
Target:  5'- -cCCGUC-CC-CCGCCCCUGCa---- -3'
miRNA:   3'- gaGGCAGuGGuGGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 53296 0.68 0.761154
Target:  5'- --gCGUCGCaaaACCACCCCCGUc---- -3'
miRNA:   3'- gagGCAGUGg--UGGUGGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 75110 0.68 0.751861
Target:  5'- gUCCGggGgCGCgACCCCCGCgaagAUGUu -3'
miRNA:   3'- gAGGCagUgGUGgUGGGGGCGa---UACA- -5'
3608 5' -58.4 NC_001650.1 + 134730 0.68 0.751861
Target:  5'- -gUCGUCugCACCACUCgCGCgcgUAUGUu -3'
miRNA:   3'- gaGGCAGugGUGGUGGGgGCG---AUACA- -5'
3608 5' -58.4 NC_001650.1 + 88836 0.68 0.750926
Target:  5'- -cCCGUCGCCGCCggggcaggaguagACCCCC-CUGg-- -3'
miRNA:   3'- gaGGCAGUGGUGG-------------UGGGGGcGAUaca -5'
3608 5' -58.4 NC_001650.1 + 46717 0.68 0.742468
Target:  5'- -cCCgGUCGCCGCCGCCCCgaCGCc---- -3'
miRNA:   3'- gaGG-CAGUGGUGGUGGGG--GCGauaca -5'
3608 5' -58.4 NC_001650.1 + 111307 0.68 0.742468
Target:  5'- --gCGUCgcgACCGCCGCCCUCGCgccUGg -3'
miRNA:   3'- gagGCAG---UGGUGGUGGGGGCGau-ACa -5'
3608 5' -58.4 NC_001650.1 + 133092 0.68 0.742468
Target:  5'- -aCCGcCuCCACCACCuCCCGCUc--- -3'
miRNA:   3'- gaGGCaGuGGUGGUGG-GGGCGAuaca -5'
3608 5' -58.4 NC_001650.1 + 80228 0.69 0.723418
Target:  5'- gCUCuCGggUGCCGCCuacuCCCCCGCUAg-- -3'
miRNA:   3'- -GAG-GCa-GUGGUGGu---GGGGGCGAUaca -5'
3608 5' -58.4 NC_001650.1 + 102974 0.69 0.713778
Target:  5'- -gCCGgCGCCGCCuccucCCCCUGCUGaUGUu -3'
miRNA:   3'- gaGGCaGUGGUGGu----GGGGGCGAU-ACA- -5'
3608 5' -58.4 NC_001650.1 + 66662 0.69 0.704072
Target:  5'- aCUCUGUCugCGCgGCCCCCuucuccaaGCcgGUGg -3'
miRNA:   3'- -GAGGCAGugGUGgUGGGGG--------CGa-UACa -5'
3608 5' -58.4 NC_001650.1 + 142917 0.69 0.69431
Target:  5'- -gCCGcgcCGCCGCCGCCgCCCGCUc--- -3'
miRNA:   3'- gaGGCa--GUGGUGGUGG-GGGCGAuaca -5'
3608 5' -58.4 NC_001650.1 + 51382 0.69 0.69431
Target:  5'- -cCCGUagaccacgcgCGCCGCCugCCCCGCg---- -3'
miRNA:   3'- gaGGCA----------GUGGUGGugGGGGCGauaca -5'
3608 5' -58.4 NC_001650.1 + 27697 0.69 0.674645
Target:  5'- uCUCCc-CGCCGCCGCCCCgGUUGg-- -3'
miRNA:   3'- -GAGGcaGUGGUGGUGGGGgCGAUaca -5'
3608 5' -58.4 NC_001650.1 + 108300 0.7 0.664759
Target:  5'- -aCCGUggucaGCUGCCGCCCCCGCg---- -3'
miRNA:   3'- gaGGCAg----UGGUGGUGGGGGCGauaca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.