miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3609 3' -55.8 NC_001650.1 + 22005 0.66 0.918168
Target:  5'- gGCCUGacCUCAaguuCGCCCGCGUGc----- -3'
miRNA:   3'- aUGGAC--GAGU----GCGGGCGCACcauuuu -5'
3609 3' -55.8 NC_001650.1 + 22947 0.66 0.906164
Target:  5'- aGCCUGCUCugGCa--CGUGGa---- -3'
miRNA:   3'- aUGGACGAGugCGggcGCACCauuuu -5'
3609 3' -55.8 NC_001650.1 + 94836 0.67 0.864513
Target:  5'- gACCUGCgcgacaagAUGCCCGUgGUGGUGGu- -3'
miRNA:   3'- aUGGACGag------UGCGGGCG-CACCAUUuu -5'
3609 3' -55.8 NC_001650.1 + 127521 0.67 0.864513
Target:  5'- gAUUUGCUCugGUggGCGUGGUAGu- -3'
miRNA:   3'- aUGGACGAGugCGggCGCACCAUUuu -5'
3609 3' -55.8 NC_001650.1 + 80801 0.67 0.856793
Target:  5'- aACCUGCUCAggguggugUGCUCGCugaUGGUGGGg -3'
miRNA:   3'- aUGGACGAGU--------GCGGGCGc--ACCAUUUu -5'
3609 3' -55.8 NC_001650.1 + 50683 0.68 0.840736
Target:  5'- cUACCUGCU---GCCCGUGacccUGGUGAAGc -3'
miRNA:   3'- -AUGGACGAgugCGGGCGC----ACCAUUUU- -5'
3609 3' -55.8 NC_001650.1 + 83508 0.68 0.840736
Target:  5'- -cCCUGCagGCGCCCGauaGGUGGGAg -3'
miRNA:   3'- auGGACGagUGCGGGCgcaCCAUUUU- -5'
3609 3' -55.8 NC_001650.1 + 37942 0.68 0.806362
Target:  5'- gGCCUGCUCA-GCUCG-GUGGaGAAGg -3'
miRNA:   3'- aUGGACGAGUgCGGGCgCACCaUUUU- -5'
3609 3' -55.8 NC_001650.1 + 82802 0.68 0.806362
Target:  5'- cACCUGCaCAgGCCCGCGaGGa---- -3'
miRNA:   3'- aUGGACGaGUgCGGGCGCaCCauuuu -5'
3609 3' -55.8 NC_001650.1 + 122503 0.7 0.700311
Target:  5'- cAgCUGCUCGCGCgCCGCGgGGg---- -3'
miRNA:   3'- aUgGACGAGUGCG-GGCGCaCCauuuu -5'
3609 3' -55.8 NC_001650.1 + 74377 0.72 0.628321
Target:  5'- cUACCUGCaUgGCGaCCUGCGUGGgugGGGAg -3'
miRNA:   3'- -AUGGACG-AgUGC-GGGCGCACCa--UUUU- -5'
3609 3' -55.8 NC_001650.1 + 35695 0.72 0.597341
Target:  5'- gGCCgggggGCUCACGgCCGCGgGGUGc-- -3'
miRNA:   3'- aUGGa----CGAGUGCgGGCGCaCCAUuuu -5'
3609 3' -55.8 NC_001650.1 + 120965 0.78 0.288241
Target:  5'- gACCUGUUCGCGCCCGUcuccGUGGUc--- -3'
miRNA:   3'- aUGGACGAGUGCGGGCG----CACCAuuuu -5'
3609 3' -55.8 NC_001650.1 + 27255 1.05 0.005591
Target:  5'- gUACCUGCUCACGCCCGCGUGGUAAAAg -3'
miRNA:   3'- -AUGGACGAGUGCGGGCGCACCAUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.