Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3609 | 5' | -55.6 | NC_001650.1 | + | 124496 | 0.68 | 0.865542 |
Target: 5'- cGGccucgUCCCUGCcauugGGGGGUUuggaCUUGGUGu -3' miRNA: 3'- -CCaaa--AGGGACG-----UCCCCGA----GAACCGC- -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 99629 | 0.68 | 0.865542 |
Target: 5'- cGGUggUCCCgGUGGuGGGCU--UGGCa -3' miRNA: 3'- -CCAaaAGGGaCGUC-CCCGAgaACCGc -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 94031 | 0.68 | 0.865542 |
Target: 5'- cGGUgaa-CCUGCcGGGGCUCacGGUc -3' miRNA: 3'- -CCAaaagGGACGuCCCCGAGaaCCGc -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 117551 | 0.68 | 0.857983 |
Target: 5'- ----gUCCa-GCAGGGcGCUCUcGGCGu -3' miRNA: 3'- ccaaaAGGgaCGUCCC-CGAGAaCCGC- -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 69740 | 0.68 | 0.857983 |
Target: 5'- cGGacggCCCUGCAGGuguagaagauaGGCUCgggccucagGGCGg -3' miRNA: 3'- -CCaaaaGGGACGUCC-----------CCGAGaa-------CCGC- -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 87064 | 0.68 | 0.857983 |
Target: 5'- aGUUggCCa-GCAGGGGCUUgaUGGUGa -3' miRNA: 3'- cCAAaaGGgaCGUCCCCGAGa-ACCGC- -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 26575 | 0.69 | 0.808637 |
Target: 5'- -----cCCCUGCucucGGGGCUCacGGUGg -3' miRNA: 3'- ccaaaaGGGACGu---CCCCGAGaaCCGC- -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 136814 | 0.7 | 0.781729 |
Target: 5'- cGGUga-CCCUcuuGGGGUUCUUGGCc -3' miRNA: 3'- -CCAaaaGGGAcguCCCCGAGAACCGc -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 57188 | 0.71 | 0.744042 |
Target: 5'- gGGUcacCCCUcacaGCGGGGGC-CUUGGUa -3' miRNA: 3'- -CCAaaaGGGA----CGUCCCCGaGAACCGc -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 59448 | 0.71 | 0.714729 |
Target: 5'- aGUcgUCCCUGCAGGcGCagUUGGCc -3' miRNA: 3'- cCAaaAGGGACGUCCcCGagAACCGc -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 158156 | 0.71 | 0.704808 |
Target: 5'- gGGUgaccgccUCCCUcacGCuGGGGUUCUUGGgGa -3' miRNA: 3'- -CCAaa-----AGGGA---CGuCCCCGAGAACCgC- -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 63450 | 0.78 | 0.363116 |
Target: 5'- cGGUcUUUUCCUGCAGGGGCUCguucGCc -3' miRNA: 3'- -CCA-AAAGGGACGUCCCCGAGaac-CGc -5' |
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3609 | 5' | -55.6 | NC_001650.1 | + | 27221 | 1.12 | 0.002497 |
Target: 5'- aGGUUUUCCCUGCAGGGGCUCUUGGCGa -3' miRNA: 3'- -CCAAAAGGGACGUCCCCGAGAACCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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