miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3610 3' -54.6 NC_001650.1 + 158654 0.66 0.962486
Target:  5'- aGGGUGGUgcaCGAGgcCCugGUCAAugacaccagcguccAGAGGu -3'
miRNA:   3'- -CCCGCCG---GCUCa-GGugCAGUU--------------UCUUC- -5'
3610 3' -54.6 NC_001650.1 + 134086 0.67 0.956418
Target:  5'- gGGGCGGCCucuaGAGgcgaCCGCuGcCAAgcAGAGGg -3'
miRNA:   3'- -CCCGCCGG----CUCa---GGUG-CaGUU--UCUUC- -5'
3610 3' -54.6 NC_001650.1 + 70923 0.67 0.952553
Target:  5'- -cGUGGCCG---CCAUGUCAGAGAGc -3'
miRNA:   3'- ccCGCCGGCucaGGUGCAGUUUCUUc -5'
3610 3' -54.6 NC_001650.1 + 90341 0.67 0.952553
Target:  5'- aGGuaGGCCGcaaAGUCCACaUC-GAGAGGc -3'
miRNA:   3'- -CCcgCCGGC---UCAGGUGcAGuUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 61562 0.67 0.952553
Target:  5'- aGGGUGGCCaGGGUCaagGCGggCAugcuGAGGg -3'
miRNA:   3'- -CCCGCCGG-CUCAGg--UGCa-GUuu--CUUC- -5'
3610 3' -54.6 NC_001650.1 + 76995 0.67 0.948463
Target:  5'- uGGUguaGGCgGGGUCCACGUacAGGAAc -3'
miRNA:   3'- cCCG---CCGgCUCAGGUGCAguUUCUUc -5'
3610 3' -54.6 NC_001650.1 + 69172 0.67 0.948463
Target:  5'- aGGUccGGCC-AGUCCGCcaCGAAGGAGa -3'
miRNA:   3'- cCCG--CCGGcUCAGGUGcaGUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 75433 0.67 0.944147
Target:  5'- gGGGCGGgCGAGgaagcgagcgCCGCG--AGAGggGc -3'
miRNA:   3'- -CCCGCCgGCUCa---------GGUGCagUUUCuuC- -5'
3610 3' -54.6 NC_001650.1 + 155045 0.67 0.944147
Target:  5'- aGGCGGCCGAGggguCG-CAGAGcAGg -3'
miRNA:   3'- cCCGCCGGCUCagguGCaGUUUCuUC- -5'
3610 3' -54.6 NC_001650.1 + 182025 0.67 0.9396
Target:  5'- gGGGCGGCUG----CACGgggggCAGAGGAGg -3'
miRNA:   3'- -CCCGCCGGCucagGUGCa----GUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 15318 0.67 0.9396
Target:  5'- gGGGCGGCUG----CACGgggggCAGAGGAGg -3'
miRNA:   3'- -CCCGCCGGCucagGUGCa----GUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 56586 0.67 0.9396
Target:  5'- aGGGCGGCCcgguucgcccguGGGcgagcgCCugGagAAAGAGGg -3'
miRNA:   3'- -CCCGCCGG------------CUCa-----GGugCagUUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 68805 0.67 0.934823
Target:  5'- gGGGCaGGCCGGGgcCCuCGcUCGAGGGGc -3'
miRNA:   3'- -CCCG-CCGGCUCa-GGuGC-AGUUUCUUc -5'
3610 3' -54.6 NC_001650.1 + 18586 0.67 0.934823
Target:  5'- aGGGCuGGCCG-GUuuaCCugGUCuggcagaguGGAGGAGa -3'
miRNA:   3'- -CCCG-CCGGCuCA---GGugCAG---------UUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 83230 0.68 0.929812
Target:  5'- gGGGCGGUCGcg--CGCGUC-GAGAAGc -3'
miRNA:   3'- -CCCGCCGGCucagGUGCAGuUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 66936 0.68 0.924568
Target:  5'- gGGGCgcggauGGCgGcGUCCuuGUCAAAGAAa -3'
miRNA:   3'- -CCCG------CCGgCuCAGGugCAGUUUCUUc -5'
3610 3' -54.6 NC_001650.1 + 109574 0.68 0.91909
Target:  5'- aGG-GGCCc-GUCCGCGUCcGGGAGGc -3'
miRNA:   3'- cCCgCCGGcuCAGGUGCAGuUUCUUC- -5'
3610 3' -54.6 NC_001650.1 + 121689 0.68 0.91338
Target:  5'- aGGCGGCCucaGAGUCCAacuUCAu-GAAGu -3'
miRNA:   3'- cCCGCCGG---CUCAGGUgc-AGUuuCUUC- -5'
3610 3' -54.6 NC_001650.1 + 108834 0.68 0.91338
Target:  5'- cGGGUGGUCG-G-CCAggaUGUCAGAGAGc -3'
miRNA:   3'- -CCCGCCGGCuCaGGU---GCAGUUUCUUc -5'
3610 3' -54.6 NC_001650.1 + 84992 0.68 0.91338
Target:  5'- gGGGCgaGGCCGAG-CCggGCGUCGGAcccgacauacccGAGGu -3'
miRNA:   3'- -CCCG--CCGGCUCaGG--UGCAGUUU------------CUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.