miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3611 3' -60.8 NC_001650.1 + 136517 0.66 0.713319
Target:  5'- -cUCACgUGCCaCAGGUCgGGGGGCUg- -3'
miRNA:   3'- ucAGUG-GCGG-GUCCAGgCUCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 22180 0.67 0.703717
Target:  5'- gGGUCcCCgaggggcgugaaGCCCAGGUagCCGGGGGuCCUg -3'
miRNA:   3'- -UCAGuGG------------CGGGUCCA--GGCUCUC-GGAg -5'
3611 3' -60.8 NC_001650.1 + 134926 0.67 0.703717
Target:  5'- gGGUCcgccucugcaGCCGCCUcuGGGgcaUCCGGGgggucAGCCUCu -3'
miRNA:   3'- -UCAG----------UGGCGGG--UCC---AGGCUC-----UCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 156870 0.67 0.703717
Target:  5'- cGGgggCAUCGgCCAGc-UCGAGAGCCUCc -3'
miRNA:   3'- -UCa--GUGGCgGGUCcaGGCUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 81611 0.67 0.703717
Target:  5'- aGGUCGCCGCaCAGGgcgcgcgCCGcgcGGGCCa- -3'
miRNA:   3'- -UCAGUGGCGgGUCCa------GGCu--CUCGGag -5'
3611 3' -60.8 NC_001650.1 + 114829 0.67 0.694061
Target:  5'- cAGUagGCUGUCCAGGcugacgUCGuGGGCCUCg -3'
miRNA:   3'- -UCAg-UGGCGGGUCCa-----GGCuCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 130250 0.67 0.684356
Target:  5'- gGGUCACCGagaacauaaacuCCCuGGagUCGAGGGCCa- -3'
miRNA:   3'- -UCAGUGGC------------GGGuCCa-GGCUCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 121784 0.67 0.664835
Target:  5'- --cCGCCGCCCccgcGGUCCaGGGGGUCg- -3'
miRNA:   3'- ucaGUGGCGGGu---CCAGG-CUCUCGGag -5'
3611 3' -60.8 NC_001650.1 + 121868 0.67 0.664835
Target:  5'- aGGUgGCCG-CCAGGUCguccucgGGGGGCCUg -3'
miRNA:   3'- -UCAgUGGCgGGUCCAGg------CUCUCGGAg -5'
3611 3' -60.8 NC_001650.1 + 90428 0.67 0.664835
Target:  5'- cGUCGaagcucgCGUCCGGGUCCGAGcacAGCUUg -3'
miRNA:   3'- uCAGUg------GCGGGUCCAGGCUC---UCGGAg -5'
3611 3' -60.8 NC_001650.1 + 37088 0.68 0.645217
Target:  5'- uAGUCGCCcgGCCCgAGGUgCGGGugcaggcacAGCCUg -3'
miRNA:   3'- -UCAGUGG--CGGG-UCCAgGCUC---------UCGGAg -5'
3611 3' -60.8 NC_001650.1 + 165016 0.68 0.615735
Target:  5'- gGGUCugcucgcgGCCGCCgGcGG-CUGAGAGCUUCu -3'
miRNA:   3'- -UCAG--------UGGCGGgU-CCaGGCUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 49507 0.68 0.615735
Target:  5'- cGGUCACgcuggccaGCuCCAGGcCCGGGGGCagCUCg -3'
miRNA:   3'- -UCAGUGg-------CG-GGUCCaGGCUCUCG--GAG- -5'
3611 3' -60.8 NC_001650.1 + 46321 0.68 0.605922
Target:  5'- aAGUCAUCGCgCCGGG-CCGGGcGCUc- -3'
miRNA:   3'- -UCAGUGGCG-GGUCCaGGCUCuCGGag -5'
3611 3' -60.8 NC_001650.1 + 156268 0.68 0.605922
Target:  5'- cGGUCACCaGCCCGcGGgccaCC-AGGGCCUg -3'
miRNA:   3'- -UCAGUGG-CGGGU-CCa---GGcUCUCGGAg -5'
3611 3' -60.8 NC_001650.1 + 125233 0.68 0.604941
Target:  5'- cGUCcuCCGCCCccGGGaCCcccucuggcgaucGAGAGCCUCu -3'
miRNA:   3'- uCAGu-GGCGGG--UCCaGG-------------CUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 48200 0.68 0.600042
Target:  5'- cGGUCAaCGCCCuggagaugagcAGGaacgggcugcacaugUCCGAGGGUCUCg -3'
miRNA:   3'- -UCAGUgGCGGG-----------UCC---------------AGGCUCUCGGAG- -5'
3611 3' -60.8 NC_001650.1 + 136619 0.69 0.586355
Target:  5'- --cCACCGCCCGGGggcgUCGGGGcGCCc- -3'
miRNA:   3'- ucaGUGGCGGGUCCa---GGCUCU-CGGag -5'
3611 3' -60.8 NC_001650.1 + 131013 0.69 0.576615
Target:  5'- ---gACCG-CCAGGUCCGGGGcguccagcGCCUCc -3'
miRNA:   3'- ucagUGGCgGGUCCAGGCUCU--------CGGAG- -5'
3611 3' -60.8 NC_001650.1 + 94680 0.69 0.576615
Target:  5'- gAGgagCGCCGCCUcGGUCugguCGAGGGCgUCc -3'
miRNA:   3'- -UCa--GUGGCGGGuCCAG----GCUCUCGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.