miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3611 5' -49.1 NC_001650.1 + 40583 0.66 0.999524
Target:  5'- cUCGCGcCCCCCucGUGggUGUuUGGg-- -3'
miRNA:   3'- -AGUGCaGGGGG--CGCuuAUAuAUCaug -5'
3611 5' -49.1 NC_001650.1 + 70984 0.67 0.998906
Target:  5'- cCACcUCCCCCGagGGGgugGUAUAGgagGCg -3'
miRNA:   3'- aGUGcAGGGGGCg-CUUa--UAUAUCa--UG- -5'
3611 5' -49.1 NC_001650.1 + 105649 0.67 0.998398
Target:  5'- aUCACGUCCCCCcCGGAg--------- -3'
miRNA:   3'- -AGUGCAGGGGGcGCUUauauaucaug -5'
3611 5' -49.1 NC_001650.1 + 18020 0.67 0.998077
Target:  5'- aCACGcCCCCCGgGGAgGUGUGa--- -3'
miRNA:   3'- aGUGCaGGGGGCgCUUaUAUAUcaug -5'
3611 5' -49.1 NC_001650.1 + 71705 0.67 0.997704
Target:  5'- cCugG-CCCCCGCcGggUuucaggAGUGCa -3'
miRNA:   3'- aGugCaGGGGGCG-CuuAuaua--UCAUG- -5'
3611 5' -49.1 NC_001650.1 + 95655 0.68 0.997273
Target:  5'- gUCAUGUCCCaggagucaUGCGAAcacUAUAUGGcgACg -3'
miRNA:   3'- -AGUGCAGGGg-------GCGCUU---AUAUAUCa-UG- -5'
3611 5' -49.1 NC_001650.1 + 145664 0.68 0.995416
Target:  5'- cCAUGUCCCCCGagcgc---UGGUACa -3'
miRNA:   3'- aGUGCAGGGGGCgcuuauauAUCAUG- -5'
3611 5' -49.1 NC_001650.1 + 94583 0.69 0.993145
Target:  5'- cCuCGUCCCCCGCGuccagcccGUGCu -3'
miRNA:   3'- aGuGCAGGGGGCGCuuauauauCAUG- -5'
3611 5' -49.1 NC_001650.1 + 96155 0.69 0.993047
Target:  5'- cCAgGUCCCCCGCGucuu--UAGUc- -3'
miRNA:   3'- aGUgCAGGGGGCGCuuauauAUCAug -5'
3611 5' -49.1 NC_001650.1 + 26507 0.69 0.993047
Target:  5'- aCACGUUCCCCGUGGAgg---AG-GCg -3'
miRNA:   3'- aGUGCAGGGGGCGCUUauauaUCaUG- -5'
3611 5' -49.1 NC_001650.1 + 83067 0.69 0.991995
Target:  5'- cCugGUCCCCaccuCGCGggUua--AGUACu -3'
miRNA:   3'- aGugCAGGGG----GCGCuuAuauaUCAUG- -5'
3611 5' -49.1 NC_001650.1 + 163532 0.7 0.985438
Target:  5'- gUCACGUCCCCCGCcgccggggccgccguGAGgag--GGUGu -3'
miRNA:   3'- -AGUGCAGGGGGCG---------------CUUauauaUCAUg -5'
3611 5' -49.1 NC_001650.1 + 105564 0.7 0.982591
Target:  5'- aUCugGcagggcuUCCCCCGCGGAUAUGa----- -3'
miRNA:   3'- -AGugC-------AGGGGGCGCUUAUAUaucaug -5'
3611 5' -49.1 NC_001650.1 + 157432 0.7 0.982591
Target:  5'- uUCGaGUCCCCCGUGAAgaagaccacccgggAGUACg -3'
miRNA:   3'- -AGUgCAGGGGGCGCUUauaua---------UCAUG- -5'
3611 5' -49.1 NC_001650.1 + 82775 0.7 0.980692
Target:  5'- cUCGCGUCCUCgGCGGGcc---GGUACa -3'
miRNA:   3'- -AGUGCAGGGGgCGCUUauauaUCAUG- -5'
3611 5' -49.1 NC_001650.1 + 89291 0.7 0.980692
Target:  5'- --uCGUCCCCCGCGAcgAgccAGUccGCg -3'
miRNA:   3'- aguGCAGGGGGCGCUuaUauaUCA--UG- -5'
3611 5' -49.1 NC_001650.1 + 154818 0.71 0.970348
Target:  5'- gCGCuUCCCCCGCGGggcuuuAUAUAUAGc-- -3'
miRNA:   3'- aGUGcAGGGGGCGCU------UAUAUAUCaug -5'
3611 5' -49.1 NC_001650.1 + 75102 0.71 0.967238
Target:  5'- gCGCGaCCCCCGCGAAgAUGUucagcagcucGUGCu -3'
miRNA:   3'- aGUGCaGGGGGCGCUUaUAUAu---------CAUG- -5'
3611 5' -49.1 NC_001650.1 + 36068 0.72 0.960338
Target:  5'- cCAgGUCCCCCGCGGcgcaGUcGUACu -3'
miRNA:   3'- aGUgCAGGGGGCGCUuauaUAuCAUG- -5'
3611 5' -49.1 NC_001650.1 + 122442 0.72 0.952496
Target:  5'- gCGCGUCCCCUuugGCGAGaagcccgGGUACg -3'
miRNA:   3'- aGUGCAGGGGG---CGCUUauaua--UCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.