miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3612 3' -62.6 NC_001650.1 + 132644 0.72 0.3111
Target:  5'- cCCCCAGCCAGGCggCCUGcCUCCcGa--- -3'
miRNA:   3'- -GGGGUCGGUCCG--GGAC-GAGGaCacgu -5'
3612 3' -62.6 NC_001650.1 + 133645 0.67 0.601408
Target:  5'- gCCCCguuucacaacagAGCCAGGCCCcucCUCCUcccggGCGa -3'
miRNA:   3'- -GGGG------------UCGGUCCGGGac-GAGGAca---CGU- -5'
3612 3' -62.6 NC_001650.1 + 135450 0.66 0.630701
Target:  5'- aCUgAGCUGGGCCCgggccuguacUGCUCCagGUGUc -3'
miRNA:   3'- gGGgUCGGUCCGGG----------ACGAGGa-CACGu -5'
3612 3' -62.6 NC_001650.1 + 140092 0.7 0.409292
Target:  5'- aCCCUAGCCuGGCuuCCUGCUuCCUGg--- -3'
miRNA:   3'- -GGGGUCGGuCCG--GGACGA-GGACacgu -5'
3612 3' -62.6 NC_001650.1 + 140259 0.68 0.54354
Target:  5'- gCUCAGCCcGGCCCgggaGCUCCaccgGCGg -3'
miRNA:   3'- gGGGUCGGuCCGGGa---CGAGGaca-CGU- -5'
3612 3' -62.6 NC_001650.1 + 140460 0.65 0.664873
Target:  5'- uCCCgGGCCGGGCUgagcccaggguuacaUGCUCCcggcggcuuuagggGUGCAu -3'
miRNA:   3'- -GGGgUCGGUCCGGg--------------ACGAGGa-------------CACGU- -5'
3612 3' -62.6 NC_001650.1 + 142179 0.66 0.659027
Target:  5'- gUCCCacgcugacGGCCAcccacgcGGCgCUGCUCgaGUGCGc -3'
miRNA:   3'- -GGGG--------UCGGU-------CCGgGACGAGgaCACGU- -5'
3612 3' -62.6 NC_001650.1 + 144149 0.67 0.553079
Target:  5'- gCCCCAGaggggacagcaCCAGGCaCCUGC-CCgggGCGa -3'
miRNA:   3'- -GGGGUC-----------GGUCCG-GGACGaGGacaCGU- -5'
3612 3' -62.6 NC_001650.1 + 145944 0.76 0.170345
Target:  5'- gCCC-GCCAuGGCCCUGCcgcccugccaccUCCUGUGCc -3'
miRNA:   3'- gGGGuCGGU-CCGGGACG------------AGGACACGu -5'
3612 3' -62.6 NC_001650.1 + 155498 0.67 0.562668
Target:  5'- uCCCCAGCUccccgAGGCCCagggagaaggUGCccgUCCUGUuCAg -3'
miRNA:   3'- -GGGGUCGG-----UCCGGG----------ACG---AGGACAcGU- -5'
3612 3' -62.6 NC_001650.1 + 156205 0.66 0.611161
Target:  5'- gCCCGGCCAGGgCCauCUCCgc-GCAg -3'
miRNA:   3'- gGGGUCGGUCCgGGacGAGGacaCGU- -5'
3612 3' -62.6 NC_001650.1 + 156634 0.77 0.141522
Target:  5'- uCUCCAGCUGGGCCCUGUaguccggccccucguUCCaGUGCAc -3'
miRNA:   3'- -GGGGUCGGUCCGGGACG---------------AGGaCACGU- -5'
3612 3' -62.6 NC_001650.1 + 156899 0.66 0.624836
Target:  5'- -aCCGGCCuuugagcuGGCCCaGCUCCagaucaccgccgcgGUGCAc -3'
miRNA:   3'- ggGGUCGGu-------CCGGGaCGAGGa-------------CACGU- -5'
3612 3' -62.6 NC_001650.1 + 162765 0.66 0.620927
Target:  5'- uCCCUuuuAGaCCAGGCCCgGggCCUGggcUGCAg -3'
miRNA:   3'- -GGGG---UC-GGUCCGGGaCgaGGAC---ACGU- -5'
3612 3' -62.6 NC_001650.1 + 168466 0.66 0.660002
Target:  5'- uCCCCauuGGCCauggAGGCCCUGUgggagGUGCc -3'
miRNA:   3'- -GGGG---UCGG----UCCGGGACGagga-CACGu -5'
3612 3' -62.6 NC_001650.1 + 172837 0.67 0.562668
Target:  5'- aCCCCauGGCCaaugaAGGCCCUgGUUgCUGgGCAg -3'
miRNA:   3'- -GGGG--UCGG-----UCCGGGA-CGAgGACaCGU- -5'
3612 3' -62.6 NC_001650.1 + 181828 0.69 0.460672
Target:  5'- -gCCAGCUGGGCCgaGUguacUCUGUGCAc -3'
miRNA:   3'- ggGGUCGGUCCGGgaCGa---GGACACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.