miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3612 3' -62.6 NC_001650.1 + 130474 0.71 0.374741
Target:  5'- gUCUGGCUgcacaggaccuucaAGGCCCUGCUgccCCUGUGCc -3'
miRNA:   3'- gGGGUCGG--------------UCCGGGACGA---GGACACGu -5'
3612 3' -62.6 NC_001650.1 + 111180 0.71 0.339298
Target:  5'- gUCCCAGUCAGGCCCaggcgGCUCag--GCGg -3'
miRNA:   3'- -GGGGUCGGUCCGGGa----CGAGgacaCGU- -5'
3612 3' -62.6 NC_001650.1 + 98492 0.67 0.572301
Target:  5'- aCCCAGCCucAGGCgCCUcGCga-UGUGCu -3'
miRNA:   3'- gGGGUCGG--UCCG-GGA-CGaggACACGu -5'
3612 3' -62.6 NC_001650.1 + 131930 0.67 0.581972
Target:  5'- uUCCuGCUguGGGCCCUGCUCacgGUGg- -3'
miRNA:   3'- gGGGuCGG--UCCGGGACGAGga-CACgu -5'
3612 3' -62.6 NC_001650.1 + 168466 0.66 0.660002
Target:  5'- uCCCCauuGGCCauggAGGCCCUGUgggagGUGCc -3'
miRNA:   3'- -GGGG---UCGG----UCCGGGACGagga-CACGu -5'
3612 3' -62.6 NC_001650.1 + 67708 0.66 0.660002
Target:  5'- uUCCAGCUgAGGCCCaUGgUCCucgagaUGUGCc -3'
miRNA:   3'- gGGGUCGG-UCCGGG-ACgAGG------ACACGu -5'
3612 3' -62.6 NC_001650.1 + 1759 0.66 0.660002
Target:  5'- uCCCCauuGGCCauggAGGCCCUGUgggagGUGCc -3'
miRNA:   3'- -GGGG---UCGG----UCCGGGACGagga-CACGu -5'
3612 3' -62.6 NC_001650.1 + 45377 0.66 0.659027
Target:  5'- aCCCGGCCcaGCCCguacaGUUCCccuagggUGUGCAg -3'
miRNA:   3'- gGGGUCGGucCGGGa----CGAGG-------ACACGU- -5'
3612 3' -62.6 NC_001650.1 + 131350 0.66 0.650246
Target:  5'- gCCCGGCCggGGGCCCUGUacgggacUCUG-GCc -3'
miRNA:   3'- gGGGUCGG--UCCGGGACGa------GGACaCGu -5'
3612 3' -62.6 NC_001650.1 + 142179 0.66 0.659027
Target:  5'- gUCCCacgcugacGGCCAcccacgcGGCgCUGCUCgaGUGCGc -3'
miRNA:   3'- -GGGG--------UCGGU-------CCGgGACGAGgaCACGU- -5'
3612 3' -62.6 NC_001650.1 + 88744 0.66 0.650246
Target:  5'- cCCCCGGCCggcaagcggggcAGGCCgacGCgCCUGcGCAu -3'
miRNA:   3'- -GGGGUCGG------------UCCGGga-CGaGGACaCGU- -5'
3612 3' -62.6 NC_001650.1 + 22149 0.66 0.650246
Target:  5'- aCCCCuuCaacGGCCUgcuggGCUaCCUGUGCAg -3'
miRNA:   3'- -GGGGucGgu-CCGGGa----CGA-GGACACGU- -5'
3612 3' -62.6 NC_001650.1 + 24916 0.66 0.640477
Target:  5'- cCCCCgcgguGGCCuuuAGGaCCCUGCgggggUCCUGcUGCc -3'
miRNA:   3'- -GGGG-----UCGG---UCC-GGGACG-----AGGAC-ACGu -5'
3612 3' -62.6 NC_001650.1 + 156205 0.66 0.611161
Target:  5'- gCCCGGCCAGGgCCauCUCCgc-GCAg -3'
miRNA:   3'- gGGGUCGGUCCgGGacGAGGacaCGU- -5'
3612 3' -62.6 NC_001650.1 + 133645 0.67 0.601408
Target:  5'- gCCCCguuucacaacagAGCCAGGCCCcucCUCCUcccggGCGa -3'
miRNA:   3'- -GGGG------------UCGGUCCGGGac-GAGGAca---CGU- -5'
3612 3' -62.6 NC_001650.1 + 131576 0.67 0.601408
Target:  5'- aCCCCgaGGCCgAGGUCCUGC-CC-GUGa- -3'
miRNA:   3'- -GGGG--UCGG-UCCGGGACGaGGaCACgu -5'
3612 3' -62.6 NC_001650.1 + 156634 0.77 0.141522
Target:  5'- uCUCCAGCUGGGCCCUGUaguccggccccucguUCCaGUGCAc -3'
miRNA:   3'- -GGGGUCGGUCCGGGACG---------------AGGaCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.